Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch7g0992 | GGTGGAAGGGATTATGATGATGAACAAGATGAGTCGAAGGAAGGCGGCGTCGTGATCGGAAACCGGCGACCCAGAGGACGGCCTCCGGGATCTAAGAACAAACCAAAGCCGCCGATTATTCTCACGCGCGACAGCCCTCACGTGCTCCGCACGCACGTGATTGAGATCGCCGGAGGAGCCGACGTCGCCGACAGCATAGCCCACTTCGCTCGCCGGCGGCAGCGCGGAGTTTTTGTTCTCAGCGGGAGTGGCACGGTGGCCGACGTCACTCTCCGGCAATCCGCCGCGTCCGCCGCCGTGATACAACTTCACGGCAGATTCGAGATTCTATCTCTGACCGGAACTTTTCTTCCCGGCCGAGCCCCTCCCGGCTCGACCGGCTTGACCGTGTACCTCGCCGGCGGTCAGGGGCAGGTGGTCGGAGGGACGGTGGTGGGCCCACTATTGGCGGCTGGGCCAATAATGTTAATAGCTGCCACTTTTGCCAATGCAACTTATGAGAGATTGCCATTACCAGAGGAGGGCGAG | 528 | 60.98 | GGRDYDDEQDESKEGGVVIGNRRPRGRPPGSKNKPKPPIILTRDSPHVLRTHVIEIAGGADVADSIAHFARRRQRGVFVLSGSGTVADVTLRQSAASAAVIQLHGRFEILSLTGTFLPGRAPPGSTGLTVYLAGGQGQVVGGTVVGPLLAAGPIMLIAATFANATYERLPLPEEGE | 176 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 14151062 | 14151589 | - | MC07g0622 | Mch7g0992 | 693330 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch7g0992 | 176 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 50 | 162 | IPR005175 | - | |
| Mch7g0992 | 176 | ProSiteProfiles | PPC domain profile profile. | 46 | 176 | IPR005175 | - | |
| Mch7g0992 | 176 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
| Mch7g0992 | 176 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 48 | 175 | - | - | |
| Mch7g0992 | 176 | CDD | DUF296 | 50 | 133 | IPR005175 | - | |
| Mch7g0992 | 176 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Mch7g0992 | 176 | Gene3D | - | 49 | 176 | - | - | |
| Mch7g0992 | 176 | FunFam | AT-hook motif nuclear-localized protein | 49 | 176 | - | - | |
| Mch7g0992 | 176 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 9 | 174 | IPR014476 | GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch7g0992 | Mch-Chr7:14151062 | Mch9g1539 | Mch-Chr9:17699058 | 6.95E-73 | dispersed | |
| Mch5g0070 | Mch-Chr5:482774 | Mch7g0992 | Mch-Chr7:14151062 | 3.50E-83 | wgd | |
| Mch7g0992 | Mch-Chr7:14151062 | Mch8g2974 | Mch-Chr8:32422099 | 5.98E-89 | wgd |
Pathway information