Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch7g1020 GGAGCCACCCTCCTCGGCAAGTACCAATTGGGACGTTTCCTCGGTCGCGGAAGCTTCGCGAAGGTCTACCAGGCTTGCTCCCTCGCCGACAACGCCGTCGTCGCCGTGAAAATCATCGACAAGAACAAAACCATCGACGCCGCCATGGAGCCTTGCATTGTCCGTGAGATCGCCGTGATGCGCCGCCTTCAGCACCATCCCAACATCCTCAGAATCCACGAGGTTATGGCCACCAAAACCAAGATCTACCTCGTCGTCGATTACGCTTCCGGCGGAGAGTTGTTCGCGAAGCTCCTCCGCCGCGGCCGCCTCACGGAATCCACCGCCCGCCGCTACTTCCAACAGCTCGTCTCCGCCCTCCATTTCTGCCACCAAAGCGGCGTCGCTCACCGGGACATCAAGCCCCAGAACCTGCTCCTCGACGAGGACGGCAATCTCAAGGTCTCCGACTTCGGCCTCTCCGCCTTACCGGAGCAGATCAAAGACGGCATGCTCCACACGGCGTGCGGAACTCCCGCCTACACCGCGCCGGAGGTCGTCTCCCGGCGGGGCTACGACGGAGCAAAAGCGGACGCGTGGTCCTGCGGAGTCATACTCTTCGTTTTGCTCTCCGGCCACCTCCCCTTCAACGACAACAACCTCATGGCCATGTACAAGAAAGTGTACCGTCGGGAGTACCAATTTCCCGATTCCATTTCGAAGCCGGCTCGACATTTGATCTTCCAATTGCTTGATCCGAACCCGAACACGAGGATGAGCATCGAGGCACTGATGCAGCATTCGTGGTACAAGAAGTCGCTGCGATCCAAGCCCCAAATCAGCAACAAGAGCCTGTTCGAATCACTGGCGAATTACAAGCCAGATTCCGGGGAGGTTTCAGCGATGAACGCGTTCGATATAATTTCGATGTCTCCCGGGCTGGATTTGTCGGGGCTGTTCGAGCCGACGGATTGTAAGAAGAAGAGGTTCACGACGGGGGTGAGTATGGCGAAGGTGGAGGAGAGGGTGACGGAGATCGGAGGAGAATTGGGGTACAGAGTGGAGAAAGGGAAGAGTGGCGCCATTGGATTGGGGAAGGGGAGGATGATTTTGTTCATGGAAATTGTGCAGATTACAACAAATCTGTTGATGGTGGAGGTGAAGGTAGCTGAATCGAAGATGGAGTTTGAGAGGACGCATTGGGGAGATTTGAAAGCCAAGTTGCAGGACATTGTTGTTTCTTGGCACACCAATGAG 1236 56.39 GATLLGKYQLGRFLGRGSFAKVYQACSLADNAVVAVKIIDKNKTIDAAMEPCIVREIAVMRRLQHHPNILRIHEVMATKTKIYLVVDYASGGELFAKLLRRGRLTESTARRYFQQLVSALHFCHQSGVAHRDIKPQNLLLDEDGNLKVSDFGLSALPEQIKDGMLHTACGTPAYTAPEVVSRRGYDGAKADAWSCGVILFVLLSGHLPFNDNNLMAMYKKVYRREYQFPDSISKPARHLIFQLLDPNPNTRMSIEALMQHSWYKKSLRSKPQISNKSLFESLANYKPDSGEVSAMNAFDIISMSPGLDLSGLFEPTDCKKKRFTTGVSMAKVEERVTEIGGELGYRVEKGKSGAIGLGKGRMILFMEIVQITTNLLMVEVKVAESKMEFERTHWGDLKAKLQDIVVSWHTNE 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14380900 14382135 - MC07g0646 Mch7g1020 693358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch7g1020 412 SUPERFAMILY Protein kinase-like (PK-like) 5 274 IPR011009 -
Mch7g1020 412 FunFam Non-specific serine/threonine protein kinase 1 93 - -
Mch7g1020 412 SMART serkin_6 8 263 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch7g1020 412 ProSiteProfiles NAF domain profile. 290 314 IPR018451 GO:0007165(InterPro)
Mch7g1020 412 Gene3D Kinase associated domain 1, KA1 291 407 - -
Mch7g1020 412 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524(InterPro)
Mch7g1020 412 Gene3D Phosphorylase Kinase; domain 1 11 93 - -
Mch7g1020 412 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch7g1020 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch7g1020 412 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 384 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Mch7g1020 412 ProSiteProfiles Protein kinase domain profile. 8 263 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch7g1020 412 Gene3D Transferase(Phosphotransferase) domain 1 94 285 - -
Mch7g1020 412 FunFam Non-specific serine/threonine protein kinase 1 287 - -
Mch7g1020 412 CDD CIPK_C 296 398 - -
Mch7g1020 412 Pfam NAF domain 293 349 IPR004041 GO:0007165(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch7g1020 Mch-Chr7:14380900 Mch8g2989 Mch-Chr8:32521646 3.50E-122 dispersed
Mch5g0096 Mch-Chr5:619108 Mch7g1020 Mch-Chr7:14380900 5.24E-24 transposed
Mch6g0442 Mch-Chr6:2941619 Mch7g1020 Mch-Chr7:14380900 1.22E-19 transposed
Mch9g0766 Mch-Chr9:5724608 Mch7g1020 Mch-Chr7:14380900 6.36E-13 transposed
Mch5g0540 Mch-Chr5:3592707 Mch7g1020 Mch-Chr7:14380900 1.36E-179 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77555 PF00069 Pkinase 1.10E-72 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch7g1020 K12761 - csv:101215156 757.288