Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch7g1033 ATGAGTGCCGGCGCGGCGACGTTCCGGTCCATTCTTGACAAACCCCTCAACCAGCTGACGGAGGATGACATTTCGCAGCTCACGCGAGAGGATTGTCGCAAATACCTCAAGGAAAAAGGAATGCGGCGGCCCTCGTGGAACAAATCTCAGGCGATCCAGCAGGTTATTTCTCTTAAAGCATTGCTTGAGCCTTGTGACGATTCCGGCGCCGGTGCTCTTCGGAAGGTCGTCGTTTCGCCTCGGGTGAATTCAAATCAAGGCGATTCACCCAAAGAACCAAGTGACGATGCTCAGTTTACGATGTCAGTTGATGAATCTGCTTATAGCAATGTGGAGACTGCAAAATCTACTCCAGAGGATCCACCAGTTGAACCAGACAACAAAGTCACCAGTCCCAGAGATCAATGCGAAACAAATGGACGAGATGGGCAAATGACAATTTTCTATTGTGGCAAGGTGAACGTGTATGATGGAGTCTCACCAGATAAGGCATTGGCAATCATGCATCTTGCAGCAAGTCCAATGCCTTTCCCTCAGAATCATCCATTGGGTGGAACTGCTGCATGTCAGTCTCCACCATGTCTTTTACAGACTGCCAATGAGAGAGATGACTTTTTTCCTCCTAGTGCCTCTATCTATCGAAATGTGCACACAGGTGAGAAGATGGTAGAGTACCCTCAGCAGCAGCATGTAAAAGGAAACAGTACTCGAGATTCTGATGTTGAGGGTCAGGCGAGTCGGAAAGTTTCATTACAGAGATATCTTGAAAAGCGAAAAGACAGGGGAAGGTTAAAGAACAAGAAAAATACAGGATTGCCTTCTTCTAGCCTGGAGGGGTATATGAACCATCAAATGAGGACGCACATATCCAATAAGAATTTAGGTCAGAGTGTGACAAGCTCTTTATCCCCAACTGGAGTAGCAAAAGCCTTCGTTGGAACAGCCGACAATCAGTCAAAATTTGCATGTTTTCCTGTCGACCTTAATGTTAAAGACGTCCAGGAGTGCTGA 1011 46.88 MSAGAATFRSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKALLEPCDDSGAGALRKVVVSPRVNSNQGDSPKEPSDDAQFTMSVDESAYSNVETAKSTPEDPPVEPDNKVTSPRDQCETNGRDGQMTIFYCGKVNVYDGVSPDKALAIMHLAASPMPFPQNHPLGGTAACQSPPCLLQTANERDDFFPPSASIYRNVHTGEKMVEYPQQQHVKGNSTRDSDVEGQASRKVSLQRYLEKRKDRGRLKNKKNTGLPSSSLEGYMNHQMRTHISNKNLGQSVTSSLSPTGVAKAFVGTADNQSKFACFPVDLNVKDVQEC 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14470420 14475520 - MC07g0657 Mch7g1033 693371

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch7g1033 336 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 20 264 IPR040390 GO:0005634(PANTHER)|GO:0009611(PANTHER)|GO:0031347(PANTHER)|GO:2000022(PANTHER)
Mch7g1033 336 SMART tify_2 138 173 IPR010399 -
Mch7g1033 336 MobiDBLite consensus disorder prediction 226 279 - -
Mch7g1033 336 Pfam tify domain 144 172 IPR010399 -
Mch7g1033 336 Pfam Jas motif 245 261 IPR018467 -
Mch7g1033 336 ProSiteProfiles Tify domain profile. 138 173 IPR010399 -
Mch7g1033 336 MobiDBLite consensus disorder prediction 109 141 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch7g1033 - - - - 0.0
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch9g0149 . 1 228 Tify Gene Family AT3G21175 57.5 2.2e-59 225.7
Mch8g0264 . 48 298 Tify Gene Family AT4G24470 53.9 2.2e-68 256.1
Mch4g0873 . 88 266 Tify Gene Family AT4G24470 60.9 1.3e-49 193.7
Mch9g0149 . 71 271 Tify Gene Family AT4G24470 52.0 7.6e-45 177.9
Mch9g0149 . 1 286 Tify Gene Family AT1G51600 60.6 6.5e-86 314.3
Mch8g0263 . 69 250 Tify Gene Family AT1G51600 57.7 2.3e-51 199.5
Mch4g0873 . 90 268 Tify Gene Family AT1G51600 61.5 5.2e-51 198.4
Mch8g0264 . 35 252 Tify Gene Family AT1G51600 52.3 1.7e-49 193.4
Mch8g0264 . 48 298 Tify Gene Family AT4G24470 53.9 2.2e-68 256.1
Mch4g0873 . 88 266 Tify Gene Family AT4G24470 60.9 1.3e-49 193.7
Mch9g0149 . 71 271 Tify Gene Family AT4G24470 52.0 7.6e-45 177.9
Mch9g0149 . 1 286 Tify Gene Family AT1G51600 60.6 6.5e-86 314.3
Mch8g0263 . 69 250 Tify Gene Family AT1G51600 57.7 2.3e-51 199.5
Mch4g0873 . 90 268 Tify Gene Family AT1G51600 61.5 5.2e-51 198.4
Mch8g0264 . 35 252 Tify Gene Family AT1G51600 52.3 1.7e-49 193.4
Mch9g0149 . 1 228 Tify Gene Family AT3G21175 57.5 2.2e-59 225.7
Mch7g1033 . 1 180 Tify Gene Family AT4G14713 51.6 5.4e-45 177.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003252 2 5 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 4 1 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43729 PF06200 tify 1.10E-14 No_clan Mch TF