Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch7g1139 ATGTCGCTCAAGAGTATCTTCCAGGATATGAGGTCCCGCTCGCGCCGAGTGGTGCAGGACGGCTCCGCTCCGGAGCGGAGGGACGGCCTCGACCAGAGCTGCTGGGCTAATATGCCTCAGGAGCTGCTCCGGGAGGTTCTGGTCAGAATTGAGGCCTCCGAGACTGCGTGGCCGCCGAGGAAGAGTGTAGTGGCCTGCGCCGGAGTGTGCCGGAGCTGGCGAGCCATTACTAAGGAGATCGTGAGAACGCCGGAGATTTCCGGCAGGTTGACGTTCCCGATCTCCGTCAAGCAGCCTGGTCCAAGGGATCCTCTTCTACAGTGTTTCATAAAGCGAAACAGATCCAATCAAACTTATTATCTTTTCCTCTGTTTGACTACTGCACTAAGTGACGACGGGAAATTTCTACTTGCTGCACGCAAATGCAAGCGCCCAACCTACACGGATTATGTTATCTCTTTACATGCTGAGGATTTGTCAAAGGGGAGCAGCACCTATGTTGGGAAGTTGAGATCTAATTTTCTAGGAACCAAGTTCACAATCTTTGATGGGCAACCACCACATTCTGGAGCCAAGATCACAAAAAGTCGCTCCACAAGGCTAGTGAATCTGAAACAAGTTTCACCCAAGGCCCCTGCAGGGAACTATCCAGTTGCCCACATTTCATATGAATTAAATGTACTGGGATCGAGGGGTCCGAGGAGAATGCAATGTGTCATGGATTCTATTCCCGCTTCCTCGGTTGAACCTGGAGGAGTGGCTCCAACGCAAACCGAGATTTCTTTGAGCAACGTGGAATTGTTTCCATCATTCCCGTTTCTGAGGTCAAAATCAAATGCAGACAACTTGCTTTCTGAGCCTTTGGGCAGTCAGAAGGATGGAATGCTGGTGCTCCGAAACAAGACTCCCAGGTGGCACGAGCAGCTTCAGTGCTGGTGTTTGAACTTTCATGGAAGAGTTACCATTGCTTCTGTGAAAAATTTTCAACTAGTTGCTTCTCCGGAAAACGAACCGCCTACGCAAGAAAATGAGAAGATCATCCTCCAGTTTGGAAAAGTGGGGAAGGATCTATTCACAATGGATTATCGTTACCCAATCTCGGCTTTCCAGGCTTTTGCAATCTGCCTCAGCAGCTTTGACACAAAGATTGCTTGTGAATGA 1161 49.7 MSLKSIFQDMRSRSRRVVQDGSAPERRDGLDQSCWANMPQELLREVLVRIEASETAWPPRKSVVACAGVCRSWRAITKEIVRTPEISGRLTFPISVKQPGPRDPLLQCFIKRNRSNQTYYLFLCLTTALSDDGKFLLAARKCKRPTYTDYVISLHAEDLSKGSSTYVGKLRSNFLGTKFTIFDGQPPHSGAKITKSRSTRLVNLKQVSPKAPAGNYPVAHISYELNVLGSRGPRRMQCVMDSIPASSVEPGGVAPTQTEISLSNVELFPSFPFLRSKSNADNLLSEPLGSQKDGMLVLRNKTPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENEPPTQENEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15273539 15280347 + MC07g0755 Mch7g1139 693477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch7g1139 386 CDD F-box_AtTLP-like 35 79 - -
Mch7g1139 386 PANTHER TUBBY-RELATED 31 385 - -
Mch7g1139 386 FunFam Tubby-like F-box protein 92 386 - -
Mch7g1139 386 MobiDBLite consensus disorder prediction 1 31 - -
Mch7g1139 386 ProSitePatterns Tub family signature 1. 316 329 IPR018066 -
Mch7g1139 386 PRINTS Tubby superfamily signature 215 242 IPR000007 -
Mch7g1139 386 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Mch7g1139 386 PRINTS Tubby superfamily signature 316 332 IPR000007 -
Mch7g1139 386 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Mch7g1139 386 PRINTS Tubby superfamily signature 298 315 IPR000007 -
Mch7g1139 386 PRINTS Tubby superfamily signature 343 362 IPR000007 -
Mch7g1139 386 PRINTS Tubby superfamily signature 364 386 IPR000007 -
Mch7g1139 386 Gene3D Tubby Protein; Chain A 93 386 IPR025659 -
Mch7g1139 386 SUPERFAMILY F-box domain 28 78 IPR036047 GO:0005515(InterPro)
Mch7g1139 386 ProSitePatterns Tub family signature 2. 371 386 IPR018066 -
Mch7g1139 386 MobiDBLite consensus disorder prediction 9 27 - -
Mch7g1139 386 Pfam Tub family 96 381 IPR000007 -
Mch7g1139 386 SUPERFAMILY Tubby C-terminal domain-like 84 386 IPR025659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0176 Mch-Chr11:1149384 Mch7g1139 Mch-Chr7:15273539 5.90E-144 dispersed
Mch4g1886 Mch-Chr4:21539841 Mch7g1139 Mch-Chr7:15273539 1.30E-148 dispersed
Mch7g1139 Mch-Chr7:15273539 Mch9g0482 Mch-Chr9:3555732 1.43E-13 dispersed
Mch10g1052 Mch-Chr10:7666224 Mch7g1139 Mch-Chr7:15273539 6.75E-129 transposed
Mch11g1391 Mch-Chr11:10006150 Mch7g1139 Mch-Chr7:15273539 1.72E-151 transposed
Mch5g0669 Mch-Chr5:4512248 Mch7g1139 Mch-Chr7:15273539 2.89E-229 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43735 PF01167 Tub 2.90E-111 CL0395 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch7g1139 K19600 - csv:101203437 728.013