Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch7g1193 ATGTCTAGCGATGATGGTGGAAAGAAAAAAATCGCAATTGTGAGCGTCTCCGCTCTGGTCCTTGTGGCGATGGTGGTGGCTGTCGCTGTCACCAACTCTAAAAGCGCCGCTCCTGATACAGCATCCAGTGGCGAAATTACAACGTCCACAAAAGCAATCAAAGCAATTTGCCAACCCACTGATTACAAAGAAATTTGCGAAGAAAGCCTTACCAAGGAGGGAGTAACCAGTACGGACCCAAAAGAATTGGTCAAGTCGGCGTTCAAAATCGCCACGGATTACGTAAACGGGGCGATTCAAAACTCCACGACTCTGAAAGAGCTGGCTAAAGATCCACGAGCCAACCAAGCCTTACAAAACTGTCGCGAGCTCCTCGAGTTCGCCATCGACGATATCAAACAGTCGTTCGACAGAATCAGCACATTTCAAATGGGCGAAGTCAAAGCGTTCGTCGAGGATTTGAAAGTGTGGCTCAGTGGTGCAATGACGTACGAGGACACTTGTTTGGATGGGTTCGAGAACACCACCGGTGAGGCGGGTGAGAAGATGAAGCAGTTTTTGAAGTCGTCTCAGCAACTGACCAGTAATGGTCTAGCCATGGTCACCGAATTGTCCAAAACTTTGGGTGATCTTCAGCTTCCAACATTGGGCCGACGCCTCATGGGCGAGGACGGCATCCCGGAATGGGTCAGCGACACCAATAGGCGGCTGTTGCAGGCTGGGCCACCCGCAGTTAAGCCCAACGTGGTGGTGGCACAAGACGGAAGTGGGAAATACAAGACCATTAACGAGGCTTTGGCTGAAATTCCCAAAAAGAGTAATGTCACCTTTGTGATCCATGTCAAGGCCGGTATTTATGAGGAACATGTTGTCATTACGAAAGCTATGACCCACGTCACCATGTATGGAGATGGCCCCACCAAAACCGTCGTCACCGGTAGCCTTAACTACGTTGACGGTATTCAAACTTTCAAGACAGCCTCATTCGCTGCCATTGGAGCCAACTTCTTCGCGAGAGACATGGGTTTCGAGAACTCTGCAGGACCTACTAAGCACCAGGCCGTGGCATTGCGAGTCCAATCCGACAGATCGATCTTCTACAACTGCAGAATGGACGGGTACCAAGATACGCTGTACACCCAAACCCACCGTCAATTCTACCGCGACTGCGTCATCACTGGCACCATTGACTTCGTATTTGGAAACGCCGCGGCCGTGTTCCAGAATTGCCAGCTCGTGGTCCGAAAGCCAATGGACAACCAACAGTGCATCGTGACAGCCCAAGGCAGGCTCGAGGAGCGTGAGCCAACCGCACTCGTGTTCCAGAGCTGCCACTTCACGTCCGACCCAGCCTACTACCCACATAGAGCTGTGAACAAGGCCTACTTGGGGAGGCCATGGAAGGCATATTCTCGCACCATCATCATGCAGTCTCAAATCGACGACCTCATCCAACCCGAGGGATGGTTGCCATGGATGGGCACCTTTGGGCTCGACACATTGTTCTACGTTGAGTTTCAGAACACTGGACCGGGGGCGGACAAGAGCAAGAGAGTTAGTTGGGCCGGTATTAAGGAGATCACACCACAACAAATCCTTGCTTTCACCCCCAAACCCTTCATCGACGGCGATGCTTGGATCAAGGACAAGGGAATTCCCTACTCATCTAATATGATGTTAGAACGAAGCCGCACTCCAGTACAATAA 1707 51.38 MSSDDGGKKKIAIVSVSALVLVAMVVAVAVTNSKSAAPDTASSGEITTSTKAIKAICQPTDYKEICEESLTKEGVTSTDPKELVKSAFKIATDYVNGAIQNSTTLKELAKDPRANQALQNCRELLEFAIDDIKQSFDRISTFQMGEVKAFVEDLKVWLSGAMTYEDTCLDGFENTTGEAGEKMKQFLKSSQQLTSNGLAMVTELSKTLGDLQLPTLGRRLMGEDGIPEWVSDTNRRLLQAGPPAVKPNVVVAQDGSGKYKTINEALAEIPKKSNVTFVIHVKAGIYEEHVVITKAMTHVTMYGDGPTKTVVTGSLNYVDGIQTFKTASFAAIGANFFARDMGFENSAGPTKHQAVALRVQSDRSIFYNCRMDGYQDTLYTQTHRQFYRDCVITGTIDFVFGNAAAVFQNCQLVVRKPMDNQQCIVTAQGRLEEREPTALVFQSCHFTSDPAYYPHRAVNKAYLGRPWKAYSRTIIMQSQIDDLIQPEGWLPWMGTFGLDTLFYVEFQNTGPGADKSKRVSWAGIKEITPQQILAFTPKPFIDGDAWIKDKGIPYSSNMMLERSRTPVQ 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15618878 15621057 - MC07g_new0393 Mch7g1193 693531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch7g1193 568 FunFam Pectinesterase 49 205 - -
Mch7g1193 568 NCBIfam pectinesterase inhibitor domain 21 204 IPR006501 GO:0004857(InterPro)
Mch7g1193 568 SMART PMEI_2 48 200 IPR006501 GO:0004857(InterPro)
Mch7g1193 568 FunFam Pectinesterase 243 558 - -
Mch7g1193 568 PANTHER PECTINESTERASE 9 549 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Mch7g1193 568 Gene3D Invertase/pectin methylesterase inhibitor family protein 47 206 IPR035513 -
Mch7g1193 568 ProSitePatterns Pectinesterase signature 2. 392 401 IPR033131 -
Mch7g1193 568 SUPERFAMILY Pectin lyase-like 244 556 IPR011050 -
Mch7g1193 568 Pfam Pectinesterase 248 544 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Mch7g1193 568 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 51 205 IPR035513 -
Mch7g1193 568 Gene3D - 243 558 IPR012334 -
Mch7g1193 568 CDD PMEI-like_3 55 206 - -
Mch7g1193 568 Pfam Plant invertase/pectin methylesterase inhibitor 51 200 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g1517 Mch-Chr4:18622202 Mch7g1193 Mch-Chr7:15618878 4.74E-153 dispersed
Mch5g0733 Mch-Chr5:4939153 Mch7g1193 Mch-Chr7:15618878 1.24E-254 dispersed
Mch6g2804 Mch-Chr6:29431398 Mch7g1193 Mch-Chr7:15618878 2.22E-225 dispersed
Mch7g1193 Mch-Chr7:15618878 Mch7g1197 Mch-Chr7:15639105 0 dispersed
Mch7g1192 Mch-Chr7:15614141 Mch7g1193 Mch-Chr7:15618878 0 tandem
Mch7g1193 Mch-Chr7:15618878 Mch7g1194 Mch-Chr7:15632105 2.57E-160 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch7g1193 K01051 - csv:101221958 805.823