Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch7g1196 ATGTCGGGCGACGATGGTGGAAAGAAGAAAATCGCAATCGTCAGCGTCTCCGCTCTGGTCCTCGTGGCGATGGTGGTGGCCGTAGCTGTCACCAATTCTAAAAGCGCCGCTCCTGATACAGCGTCCGGCGGTGAAATTACAACTTCGACAAAATCAATCAAAGCAATCTGCCAACCCACTGATTACAAAGAAATTTGCGAAGAAAGCCTTACGAAGGAGGGAGTAACCAATACAGACCCAAAAGAGTTGCTCAAGTCGGCGTTTAAAATCGCCACGGATTACGTAAACGGGGCAATTCAAAACTCGACGACTCTGAAAGAGCTGGCCAAAGATCCACGAGCCAACCAAGCCTTACAAAATTGCCGCGAGCTCCTCGAGTTCGCCATCGACGACATCAAACAGTCGTTCGACAGAATCGGCACATTCCAAATGGGCGAAGTCAAAGCGTTCGTCGAGGATTTGAAAGTGTGGCTCAGTGGTGCAATGACGTACGAGGACACTTGTTTGGACGGGTTCGAGAACACCACCGGTGAGGCGGGCGAGAAGATGAAGCAGTTTTTGAAGTCGTCTCAGCAACTGACCAGTAATGGTCTAGCCATGGTCACCGAATTGTCCAAAACTTTGGGTGATCTTCAGCTTCCCACATTGGGCCGACGGCTCATGGGTGAGGACGGTATCTCGGAATGGGTCAGTGACACCAATAGACGGCTGTTGCAGGCTGGGCCACCCGCAGTTAAGCCTAACGTGGTGGTGGCACAGGACGGAAGTGGGAAATACAAGACCATTAACGAGGCTTTGGCTGAAATTCCCAAAAATAGTAACGTCACCTTTGTGATCCATGTCAAGGCCGGTATTTATAAGGAACATGTTGTCATTACGAAGGCTATGACCCACGTCACCATGTACGGAGATGGTCCCACCAAAACCGTCGTCACCGGTAGCCTTAACTACGTTGACGGTATTCAAACTTTCAAGACAGCCTCATTCGCTGCCATCGGGGCCAACTTCTTCGCGAGAGACATGGGTTTCGAGAACACTGCAGGGCCTACTAAGCATCAGGCCGTGGCGCTGCGTGTCCAATCCGATAGATCGATCTTCTACAACTGCAGAATGGACGGGTACCAAGATACACTGTATACCCAAGCCCACCGTCAGTTCTACCGCGACTGTGTCATCACTGGCACTATTGACTTCGTATTCGGAAACGCTGCGGCCGTGTTCCAGAACTGTCAGCTGGTGGTCCGAAAGCCAATGGACAACCAACAGTGCATCGTGACAGCTCAAGGTCGGCTCGAGGAGCGTGAGCCAACCGCACTTGTATTCCAGAGCTGCCACTTTACGTCCGACCCAGCCTACTACCCACATAGAGCTGTGAACAAGGCCTACTTGGGGAGGCCATGGAAGGCATATTCCCGCACCATCATCATGCAGTCTAAAATCGACGACCTAATCCAACCTGAGGGATGGTTGCCATGGATGGGCACCTTTGGGCTTGACACATTGTTCTACGTTGAGTTTCAGAACACCGGACCGGGGGCGAACAAGAGCAAGAGAGTTGAGTGGGCCGGTATTAAAGAGATCACACCACAGCAAATCCTTGCTTTCACCCCCAAACCCTTCATCGACGGTGATGCTTGGATCAAGGACAAGGGAATTCCCTACTCATCTAATATGATGTAG 1680 51.43 MSGDDGGKKKIAIVSVSALVLVAMVVAVAVTNSKSAAPDTASGGEITTSTKSIKAICQPTDYKEICEESLTKEGVTNTDPKELLKSAFKIATDYVNGAIQNSTTLKELAKDPRANQALQNCRELLEFAIDDIKQSFDRIGTFQMGEVKAFVEDLKVWLSGAMTYEDTCLDGFENTTGEAGEKMKQFLKSSQQLTSNGLAMVTELSKTLGDLQLPTLGRRLMGEDGISEWVSDTNRRLLQAGPPAVKPNVVVAQDGSGKYKTINEALAEIPKNSNVTFVIHVKAGIYKEHVVITKAMTHVTMYGDGPTKTVVTGSLNYVDGIQTFKTASFAAIGANFFARDMGFENTAGPTKHQAVALRVQSDRSIFYNCRMDGYQDTLYTQAHRQFYRDCVITGTIDFVFGNAAAVFQNCQLVVRKPMDNQQCIVTAQGRLEEREPTALVFQSCHFTSDPAYYPHRAVNKAYLGRPWKAYSRTIIMQSKIDDLIQPEGWLPWMGTFGLDTLFYVEFQNTGPGANKSKRVEWAGIKEITPQQILAFTPKPFIDGDAWIKDKGIPYSSNMM 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15635292 15637400 - MC07g_new0396 Mch7g1196 693534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch7g1196 559 Pfam Pectinesterase 248 544 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Mch7g1196 559 NCBIfam pectinesterase inhibitor domain 19 204 IPR006501 GO:0004857(InterPro)
Mch7g1196 559 Gene3D - 243 558 IPR012334 -
Mch7g1196 559 PANTHER PECTINESTERASE 9 548 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Mch7g1196 559 FunFam Pectinesterase 49 205 - -
Mch7g1196 559 Pfam Plant invertase/pectin methylesterase inhibitor 51 200 IPR006501 GO:0004857(InterPro)
Mch7g1196 559 ProSitePatterns Pectinesterase signature 2. 392 401 IPR033131 -
Mch7g1196 559 ProSitePatterns Pectinesterase signature 1. 273 292 IPR018040 -
Mch7g1196 559 Gene3D Invertase/pectin methylesterase inhibitor family protein 47 206 IPR035513 -
Mch7g1196 559 CDD PMEI-like_3 55 206 - -
Mch7g1196 559 SUPERFAMILY Pectin lyase-like 244 556 IPR011050 -
Mch7g1196 559 FunFam Pectinesterase 243 558 - -
Mch7g1196 559 SMART PMEI_2 48 200 IPR006501 GO:0004857(InterPro)
Mch7g1196 559 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 51 205 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g1518 Mch-Chr4:18630832 Mch7g1196 Mch-Chr7:15635292 3.31E-155 dispersed
Mch7g1196 Mch-Chr7:15635292 Mch7g1198 Mch-Chr7:15643425 0 dispersed
Mch7g1195 Mch-Chr7:15633240 Mch7g1196 Mch-Chr7:15635292 1.08E-81 tandem
Mch7g1196 Mch-Chr7:15635292 Mch7g1197 Mch-Chr7:15639105 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch7g1196 K01051 - csv:101221958 803.127