Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch7g1197 ATGTCGGGTGACGACGGTGGAAAGAAGAAAATCACAATCGTGAGCGTCTCTGCTCTAGTCCTTGTGGCGATGGTGGCAGCCGTTGCTGTCACCAACTCTAAAAGCACCGCTCCTGATACAGCATCCGGCAGTGAAATTACGACATCGACAAAATCAATCAAAGCAATCTGCCAACCCACTGATTACAAAGAAATTTGTGAAGAAAGCCTTACAAAGGAGGGAGTCACCAGTACGGACCCAAAAGAGCTTGTCAAGTCAGCGTTCAAAATCGCCACGGATTACGTAAATGGAGCGATTCAAAACTCAACGACTCTAAAAGAGCTGGCCAAAGATCCACGAGCCAACCAAGCCTTACAAAATTGCCACGAGCTCCTCGAGTTCGCCATCGACGACATAAAACAGTCGTTCGATAGAATCGGCACATTCCAAATGGGCGAAGTCAAAGCGTTCGTCGAGGATTTGAAAGTGTGGCTAAGTGGTGCAATGACGTACGAGGACACTTGTTTGGACGGGTTCGAGAACACCACCGGCGAGGCGGGTGAGAAGATGAAGCAGTTTTTGAAGTCGTCTCAGCAACTGACCAGTAATGGCCTAGCCATGGTCACCGAATTGTCCAAAACTTTGGGTGATCTTCAGCTTCCCACATTGGGCCGACGACTCATGGGTGAGGACGGTATCTCGGAATGGGTCAGTGACACCAATAGACGACTGTTGCAGGCTGGGCCACCCGCAGTTAAGCCCAACGTGGTGGTGGCACAGGACGGAAGTGGGAAATACAAGACCATTAACGAGGCTTTGACTGAAATTCCCAAAAATAGTAATGTCACCTTTGTGATCCATGTCAAGGCCGGTATCTATAAGGAACATGTTGTCATTAGGAAGGATATGACCCATGTCACCATGTACGGTGATGGCCCCACCAAAACTGTTGTCACCGGTAGCCTTAACTACGTTGACGGTATTCAAACTTTCAAGACAGCCTCATTCGCTGCCATCGGGGCCAATTTCTTCGCGAGAGACATGGGTTTCGAGAACACTGCAGGGCCTACTAAGCACCAAGCCGTGGCGCTACGAGTCCAATCCGACAGATCGATCTTCTACAACTGCAGAATGGACGCGTACCAAGATACGCTGTATACCCAAACCCACCGTCAGTTCTACCGCGACTGCGTCATCACTGGCACCATTGACTTCGTATTCGGAAACGCTGCGGCCGTGTTCCAGAACTGCCAGCTCGTGGTTAGAAAGCCAATGGATAACCAACAGTGCATCGTGACAGCCCAAGGCAGGCTCGAGGAGCGTGAGCCAACCGCGCTTGTGTTCCAAAGCTGCCACTTCACGTCCGACCCAGCCTATTACCCACACAGAGCTGTGAACAAGGCCTACTTGGGGAGGCCATGGAAGGCATATTCTCGCACCATCATCATGCAGTCTAAAATCGACGACCTCATCCAACCTGAGGGATGGTTGCCATGGATGGGCACCTTTGGGCTTGACACATTGTTCTATGTTGAGTTTCAGAACACCGGTCCGGGGGCGGACAAGAGCAAGAGAGTTGAGTGGGCCGGTATCAAGGAGATCACACCACAACAAATCCTTGCTTTCACCCCCAAACCCTTCATCGACGGCGATGCTTGGATCAAGGACAAGGGAATTCCCTACTCATCTAATATGATGTTAGAACGAAGCCGCACTCCAGTACAATAA 1707 50.67 MSGDDGGKKKITIVSVSALVLVAMVAAVAVTNSKSTAPDTASGSEITTSTKSIKAICQPTDYKEICEESLTKEGVTSTDPKELVKSAFKIATDYVNGAIQNSTTLKELAKDPRANQALQNCHELLEFAIDDIKQSFDRIGTFQMGEVKAFVEDLKVWLSGAMTYEDTCLDGFENTTGEAGEKMKQFLKSSQQLTSNGLAMVTELSKTLGDLQLPTLGRRLMGEDGISEWVSDTNRRLLQAGPPAVKPNVVVAQDGSGKYKTINEALTEIPKNSNVTFVIHVKAGIYKEHVVIRKDMTHVTMYGDGPTKTVVTGSLNYVDGIQTFKTASFAAIGANFFARDMGFENTAGPTKHQAVALRVQSDRSIFYNCRMDAYQDTLYTQTHRQFYRDCVITGTIDFVFGNAAAVFQNCQLVVRKPMDNQQCIVTAQGRLEEREPTALVFQSCHFTSDPAYYPHRAVNKAYLGRPWKAYSRTIIMQSKIDDLIQPEGWLPWMGTFGLDTLFYVEFQNTGPGADKSKRVEWAGIKEITPQQILAFTPKPFIDGDAWIKDKGIPYSSNMMLERSRTPVQ 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15639105 15641122 - MC07g_new0397 Mch7g1197 693535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch7g1197 568 FunFam Pectinesterase 243 558 - -
Mch7g1197 568 Pfam Plant invertase/pectin methylesterase inhibitor 51 200 IPR006501 GO:0004857(InterPro)
Mch7g1197 568 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 51 205 IPR035513 -
Mch7g1197 568 Gene3D - 243 558 IPR012334 -
Mch7g1197 568 FunFam Pectinesterase 49 205 - -
Mch7g1197 568 ProSitePatterns Pectinesterase signature 2. 392 401 IPR033131 -
Mch7g1197 568 PANTHER PECTINESTERASE 10 549 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Mch7g1197 568 ProSitePatterns Pectinesterase signature 1. 273 292 IPR018040 -
Mch7g1197 568 SUPERFAMILY Pectin lyase-like 244 556 IPR011050 -
Mch7g1197 568 NCBIfam pectinesterase inhibitor domain 35 204 IPR006501 GO:0004857(InterPro)
Mch7g1197 568 CDD PMEI-like_3 55 206 - -
Mch7g1197 568 SMART PMEI_2 48 200 IPR006501 GO:0004857(InterPro)
Mch7g1197 568 Pfam Pectinesterase 248 544 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Mch7g1197 568 Gene3D Invertase/pectin methylesterase inhibitor family protein 47 206 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g0932 Mch-Chr3:13211601 Mch7g1197 Mch-Chr7:15639105 2.38E-137 dispersed
Mch7g1193 Mch-Chr7:15618878 Mch7g1197 Mch-Chr7:15639105 0 dispersed
Mch7g1194 Mch-Chr7:15632105 Mch7g1197 Mch-Chr7:15639105 3.72E-156 dispersed
Mch7g1195 Mch-Chr7:15633240 Mch7g1197 Mch-Chr7:15639105 9.43E-82 dispersed
Mch7g1197 Mch-Chr7:15639105 Mch8g1006 Mch-Chr8:7149800 5.60E-135 dispersed
Mch7g1196 Mch-Chr7:15635292 Mch7g1197 Mch-Chr7:15639105 0 tandem
Mch7g1197 Mch-Chr7:15639105 Mch7g1198 Mch-Chr7:15643425 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch7g1197 K01051 - csv:101221958 801.971