Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch7g1198 ATGTCTGGTGACGACGGTGGAAAGAAGACAATTGCGATCGTGAGCGTTTGCGCTCTGGTCGTTGTGGCGATGGTGGTGGCCGTCGTAGTCACCAACTCTAAAAGCGCTGCTCCGTCCGGTGGCGAAATTACAACTTCGACAAAAGCAATCAAAGCAATATGTCAACCCACTGATTACAAAGAAATTTGTGAAGAAAGCCTTACTAAGGAGGGAGTAACCAGTACGGACCCAAAAGAGCTGGTCAAGTCGGCGTTCAAAATCGCCACGGATTACGTAAACGGGGCGATTCAAAACTCCACGACTCTGAAAGAGCTGGCCAAAGATCCACGAGCCAACCAAGCCTTACAAAATTGCCGCGAGCTCCTTGAGTTCGCCATTGACGACATCAAAGAGTCGTTTGAAAGAATCGGCACATTCCAAATGGGCGAAGTCAAAACGTTCGTTGAGGATTTGAAAGTGTGGCTCAGTGGTGCAATGACGTACGAGGACACTTGTTTGGACGGATTCGAGAACACCACCGGCGAGGCGGGTGAGAAGATGAAGCAGTTTTTGAAGTCGTCTCAGCAATTGACCAGTAATGGTTTAGCCATGGTCACCGAATTGTCCAAAACTTTGGGAGATCTTCAGCTTCCCACATTGGGCCGACGGCTCATGGGCGAGGACGACATCCCAGAATGGGTCAGCGACACCAATAGGCGGCTATTGCAGGCTGGGCCACCTGCAGTTAAGCCCAACGTGGTGGTGGCGCAAGACGGAAGTGGGAAATACAAAACCATCAACGAGGCTTTGGCTGAAATTCCTAAAAAGAGTAACATCACCTTTGTGATCCATGTCAAGGCCGGTATTTACAAGGAAACTGTTGTCATTACGAAGGCTATGACCCACGTCACCATGTACGGAGATGGCCCCACCAAAACCGTCGTCACCGGTAGCCTCAACTACATTGACGGTGTTCAAACTTTCAAGACTGCCACATTTGCTGCCATCGGGGCCAACTTCTTCGCGAGAGACATGGGTTTCGAGAACTCGGCGGGGCCAACTAAGCACCAGGCCGTGGCGCTGCGAGTCCAATCCGACAGATCGATCTTCTACAATTGTCGAATGGACGGATACCAAGACACATTGTACGCGCAGACCCACCGTCAGTTCTACCGTGATTGTGTCATCACTGGCACCATTGACTTCGTGTTCGGAAACTCTGCGGCCGTCTTCCAAAACTGTCAGCTGGTGGTCCGAAAGCCAATGGACAACCAACAGTGCATCGTGACGGCTCAAGGTAGGCTCGAGGAGCGTGAGCCAACCGCGCTTGTGTTCCAAAGCTGCCACTTCACATCCGACCCAGCCTACTACCCACATAGAGCTGTGAACAAGGCCTACTTGGGGAGGCCATGGAAGGCATATTCTCGCACCATTATCATGCAGTCTCAAATCGATGACCTAATCCAACCCGAGGGATGGCTGCCATGGATGGGCACCTTTGGGCTTGACACATTGTTCTACGCCGAGTTGCAGAATACTGGACCGGGGTCGGACAAGAGCAAGAGAGTTAAGTGGGCCGGTATTAAGGAGATCACACCAGAGGAAGCCCTTGCTTTCACCCCCAAACCCTTCATCGACGGTGATGCTTGGATCAAGGACAAGAGACTCCCCTACTCATCGAATATGATGTTAGAACGAAGCCGCACTCCAGTACAATAA 1698 51.47 MSGDDGGKKTIAIVSVCALVVVAMVVAVVVTNSKSAAPSGGEITTSTKAIKAICQPTDYKEICEESLTKEGVTSTDPKELVKSAFKIATDYVNGAIQNSTTLKELAKDPRANQALQNCRELLEFAIDDIKESFERIGTFQMGEVKTFVEDLKVWLSGAMTYEDTCLDGFENTTGEAGEKMKQFLKSSQQLTSNGLAMVTELSKTLGDLQLPTLGRRLMGEDDIPEWVSDTNRRLLQAGPPAVKPNVVVAQDGSGKYKTINEALAEIPKKSNITFVIHVKAGIYKETVVITKAMTHVTMYGDGPTKTVVTGSLNYIDGVQTFKTATFAAIGANFFARDMGFENSAGPTKHQAVALRVQSDRSIFYNCRMDGYQDTLYAQTHRQFYRDCVITGTIDFVFGNSAAVFQNCQLVVRKPMDNQQCIVTAQGRLEEREPTALVFQSCHFTSDPAYYPHRAVNKAYLGRPWKAYSRTIIMQSQIDDLIQPEGWLPWMGTFGLDTLFYAELQNTGPGSDKSKRVKWAGIKEITPEEALAFTPKPFIDGDAWIKDKRLPYSSNMMLERSRTPVQ 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15643425 15645547 - MC07g_new0398 Mch7g1198 693536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch7g1198 565 CDD PMEI-like_3 52 203 - -
Mch7g1198 565 Gene3D - 240 555 IPR012334 -
Mch7g1198 565 SUPERFAMILY Pectin lyase-like 241 553 IPR011050 -
Mch7g1198 565 Pfam Plant invertase/pectin methylesterase inhibitor 48 197 IPR006501 GO:0004857(InterPro)
Mch7g1198 565 FunFam Pectinesterase 46 202 - -
Mch7g1198 565 NCBIfam pectinesterase inhibitor domain 21 201 IPR006501 GO:0004857(InterPro)
Mch7g1198 565 ProSitePatterns Pectinesterase signature 1. 270 289 IPR018040 -
Mch7g1198 565 Pfam Pectinesterase 245 541 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Mch7g1198 565 Gene3D Invertase/pectin methylesterase inhibitor family protein 44 203 IPR035513 -
Mch7g1198 565 SMART PMEI_2 45 197 IPR006501 GO:0004857(InterPro)
Mch7g1198 565 FunFam Pectinesterase 240 555 - -
Mch7g1198 565 PANTHER PECTINESTERASE 10 546 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Mch7g1198 565 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 48 202 IPR035513 -
Mch7g1198 565 ProSitePatterns Pectinesterase signature 2. 389 398 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch7g1192 Mch-Chr7:15614141 Mch7g1198 Mch-Chr7:15643425 0 dispersed
Mch7g1196 Mch-Chr7:15635292 Mch7g1198 Mch-Chr7:15643425 0 dispersed
Mch7g1198 Mch-Chr7:15643425 Mch8g1006 Mch-Chr8:7149800 1.01E-137 dispersed
Mch7g1197 Mch-Chr7:15639105 Mch7g1198 Mch-Chr7:15643425 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch7g1198 K01051 - csv:101221958 808.52