Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch7g1223 ATGTCTCTCTCCATGAAAGTGGACGTTCCAGGAACCCTCGTTGGCTCGGAGATTCATGGTTTCCATACATTGCAAGATTTGGACGTTAAAAACATCAGAGAGGAAGCAAGTGCAAGATGGCTACGCCCAAATGAAATCCTTGCAATACTATGTAACTACAAATATTTCATCATCCATGTCAAGCCAGTGAACTTGCCCAAAAGTGGAACCATTGTACTGTTTGACCGCAAGATGCTTAGGAATTTCCGCAAAGATGGGCATAATTGGAAGAAAAAGAAGGATGGGAAGACAGTAAAAGAAGCACATGAACACCTCAAAGTTGGTAATGTAGAAAGGATACATGTATACTATGCCCATGGCCTTGATAATCCAACCTTTGTCCGTCGGTGTTATTGGCTCCTTGATAAGAGTCTCGAACACATTGTCCTCGTTCATTACCGTGAAACACAAGAGAGTTCTCCATCCACATCTATGAATTCAAATTCTGGTTCTGTCTCTAACCCGTCTAGTCCTTGGCTTTTATCAGAAGAACTTGACTCCAGGGCTAATCATGTTTGTTCTGTTGGTAAAACTGAACTGTCAGAGCCTAGTGACACTGCAACAGTCATGACTCACGAACAACGGCTTCATGAGATCAATACACTTGAGTGGGATGAACTTCTTGTGACAAACGAGCCTTTCAACCCTGTTATACCTAAAGGAGAAAGACTTTCATGCTTTGACCAACAGAATGAAGTCCCAATAAATGTGGCCATCAATTTATTTGGGGACATGTCTTCACTTAATAATCCAGTTGAGTCAGTTGGTAGTACCAACAGCAATATCAGTTTTTCGGGGAGTACCAATATGTCATTAACGGGTGGTCAAACGAATTTGAATGTGAAGAGTAAGGGATCTGTTCCAGTAAACTCTGTTAATACATATGGCAATTTGTTAAATGATGGATTGCAAAGTCAGGACAGCTTTGGACGATGGATAAATGAAGTCATCACTGAATCTTCTGGTTCAGTCATTGATCCTGCTGTTGAGCCTCCCATTTCACCCATGTACAATTCCTATACTGATCTGGCATTAGATCATCATCAATCTTCTGTTATGGAGCAAATTTTTAACATAACTGATGTCTCGCCTGCGTGGGCCTTTTCTACAGAAAAAACAAAGATTCTAATCACTGGATTTTTTCACAATGAGTACGTACATCTGGCAAAGTCCAATATATTGGTCGTGTGTGGTGATACTAGTGTTAATGTTGATTTTGTTCAACCTGGAGTTTATCGCTGTCTGGTACAGCCGCATTCACCAGGACTAGTACATTTCTTCGTGAGCTTAGATGGCCACAAGCCTATTAGTCAAGTTCTGAATTTTGAGTATCGTGCACCACATTTACAAGAGCTTGTAGTTGCTTCAGAACAGAGCTACAAGTGGGAGGAGTTTCAAGTTCAGATGCGACTTGCTCATCTGTTGTTTTCTACGTCCAAAAGCCTGAGCATCATGTCGACTAAATTGACACCCATTGCCCTGAATGAGGCCCAAAAATTTGCCGTCAAAACTTCTGACATTTCTGATAGTTGGATTTATTTGTTGAAGTCAGTCAAAGAAAATAAAACTCAATTTCCACAAGCAAGAGATGGTGTTCTTGAGATCATTTTGAGAAGCAGGTTAAGGGAATGGTTGATAGAAAGAATCGCTGAAGGCTCAAAGAAAAGCACTGAGTTTGATGTTAAAGGTCAAGGAGTATTCCACTTGTGTGCCATATTGGGATATACCTGGGCTGTACACCTATTTGTCTGGTCTGGTTTATCAATAGATTTTCGAGATAAATCTGGATGGACAGCTCTTCACTGGGCAGCTTATTATGGGAGGGAGAAAATGGTAGCTGTTCTTTTATCAGTGGGGGCTAAGCCAAACTTGGTCACTGATCCCACATCGAAAAACCCTGGGGGTTGCACCGCTGCAGATCTTGCATCTATGAATGGTTATGATGGCTTAGCTGCTTATCTTTCAGAGAAGGCTTTGATATCACATTTTAACGAGATGAGCTTGGCCGGAAATGTTAGTGGTTCGTTGGAAATTAGTACAACAACCGATACAATTAATCCTGATAGCATCAGTGAGGAGCAGATGTATATAAAAGATACATTAGCAGCTTACCGAACAGCAGCTGATGCGGCAGCACGCATACAAGCTGCATTCCGTGAGCATTCTTTAAAGCTAAGGACTAGAGCAGTTGAATTCTCTACCCCTGAAGATGAAGCACGTGGTATTATTGCAGCCATGAAAATCCAACATGCCTACCGCAACTTTGAGACACGAAAAAGGATGGCAGCTGCTGCTCGTATTCAGTACAGATTTCGCACGTGGAAGATCCGCAAAGAGTTCCTACATATGCGTCGTCAAGCTATTAGGATTCAAGCTGCATTTAGAGGCTTCCAAGTGCGGAGGCAGTATTGCAAGATTGTTTGGTCAGTAGGAGTACTCGAGAAAGCTATACTGCGCTGGCGTCTTAAGAGAAAAGGTTTTCGTGGGCTTCAGGTTGCACCCACTGAAGTGGCAGAACAGCAGGAAAGTGACGCAGTAGAGAACTTCTACCATGTTAGTCAAAAACAAGCAGAAGAGCGAGTTGAGAGAGCTGTTGTGCGGGTTCAGGCCTTGTTTCGATCGAAGAAAGCACAAGAAGAGTATCGTAGGATGAAGTTAACCTACGATGAAGCAGCGCTGGAATATGAAGTACTTACACATCCTGATACGATAGCATAA 2757 42.29 MSLSMKVDVPGTLVGSEIHGFHTLQDLDVKNIREEASARWLRPNEILAILCNYKYFIIHVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNVERIHVYYAHGLDNPTFVRRCYWLLDKSLEHIVLVHYRETQESSPSTSMNSNSGSVSNPSSPWLLSEELDSRANHVCSVGKTELSEPSDTATVMTHEQRLHEINTLEWDELLVTNEPFNPVIPKGERLSCFDQQNEVPINVAINLFGDMSSLNNPVESVGSTNSNISFSGSTNMSLTGGQTNLNVKSKGSVPVNSVNTYGNLLNDGLQSQDSFGRWINEVITESSGSVIDPAVEPPISPMYNSYTDLALDHHQSSVMEQIFNITDVSPAWAFSTEKTKILITGFFHNEYVHLAKSNILVVCGDTSVNVDFVQPGVYRCLVQPHSPGLVHFFVSLDGHKPISQVLNFEYRAPHLQELVVASEQSYKWEEFQVQMRLAHLLFSTSKSLSIMSTKLTPIALNEAQKFAVKTSDISDSWIYLLKSVKENKTQFPQARDGVLEIILRSRLREWLIERIAEGSKKSTEFDVKGQGVFHLCAILGYTWAVHLFVWSGLSIDFRDKSGWTALHWAAYYGREKMVAVLLSVGAKPNLVTDPTSKNPGGCTAADLASMNGYDGLAAYLSEKALISHFNEMSLAGNVSGSLEISTTTDTINPDSISEEQMYIKDTLAAYRTAADAAARIQAAFREHSLKLRTRAVEFSTPEDEARGIIAAMKIQHAYRNFETRKRMAAAARIQYRFRTWKIRKEFLHMRRQAIRIQAAFRGFQVRRQYCKIVWSVGVLEKAILRWRLKRKGFRGLQVAPTEVAEQQESDAVENFYHVSQKQAEERVERAVVRVQALFRSKKAQEEYRRMKLTYDEAALEYEVLTHPDTIA 918
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15842323 15858058 + MC07g0824 Mch7g1223 693561

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch7g1223 918 Pfam CG-1 domain 35 148 IPR005559 GO:0003677(InterPro)
Mch7g1223 918 Pfam Ankyrin repeats (3 copies) 580 670 IPR002110 GO:0005515(InterPro)
Mch7g1223 918 Gene3D Immunoglobulins 365 461 IPR013783 -
Mch7g1223 918 SUPERFAMILY Ankyrin repeat 570 670 IPR036770 -
Mch7g1223 918 Coils Coil 887 907 - -
Mch7g1223 918 Gene3D - 773 820 - -
Mch7g1223 918 ProSiteProfiles IQ motif profile. 773 799 - -
Mch7g1223 918 ProSiteProfiles IQ motif profile. 796 820 - -
Mch7g1223 918 ProSiteProfiles CG-1 DNA-binding domain profile. 29 155 IPR005559 GO:0003677(InterPro)
Mch7g1223 918 SMART CG_1_2 32 150 IPR005559 GO:0003677(InterPro)
Mch7g1223 918 ProSiteProfiles Ankyrin repeat region circular profile. 608 636 - -
Mch7g1223 918 SMART ANK_2a 608 637 IPR002110 GO:0005515(InterPro)
Mch7g1223 918 SMART ANK_2a 647 678 IPR002110 GO:0005515(InterPro)
Mch7g1223 918 Pfam IPT/TIG domain 372 457 IPR002909 -
Mch7g1223 918 Pfam IQ calmodulin-binding motif 798 816 IPR000048 GO:0005515(InterPro)
Mch7g1223 918 SUPERFAMILY E set domains 371 458 IPR014756 -
Mch7g1223 918 MobiDBLite consensus disorder prediction 150 171 - -
Mch7g1223 918 Gene3D - 525 671 IPR036770 -
Mch7g1223 918 SMART iq_5 772 794 IPR000048 GO:0005515(InterPro)
Mch7g1223 918 SMART iq_5 719 741 IPR000048 GO:0005515(InterPro)
Mch7g1223 918 SMART iq_5 795 817 IPR000048 GO:0005515(InterPro)
Mch7g1223 918 SMART iq_5 873 895 IPR000048 GO:0005515(InterPro)
Mch7g1223 918 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 717 823 IPR027417 -
Mch7g1223 918 ProSiteProfiles IQ motif profile. 875 903 - -
Mch7g1223 918 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 28 902 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Mch7g1223 918 ProSiteProfiles Ankyrin repeat profile. 608 640 IPR002110 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch7g1223 K21596 - - csv:101211298 1470.68
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch7g0078 Mch-Chr7:825849 Mch7g1223 Mch-Chr7:15842323 6.62E-78 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch7g0078 . 3 517 CAMTA Transcription Factor Family AT1G67310 63.8 1.2e-179 627.5
Mch7g1223 . 34 911 CAMTA Transcription Factor Family AT3G16940 55.5 4.7e-264 907.5
Mch7g1223 . 11 632 CAMTA Transcription Factor Family AT4G16150 53.7 2.3e-195 679.5
Mch7g0078 . 3 517 CAMTA Transcription Factor Family AT1G67310 63.8 1.2e-179 627.5
Mch7g1223 . 11 632 CAMTA Transcription Factor Family AT4G16150 53.7 2.3e-195 679.5
Mch7g1223 . 34 911 CAMTA Transcription Factor Family AT3G16940 55.5 4.7e-264 907.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005047 3 2 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43744 PF03859 CG-1 1.10E-45 No_clan Mch TF