Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch7g1223 ATGTCTCTCTCCATGAAAGTGGACGTTCCAGGAACCCTCGTTGGCTCGGAGATTCATGGTTTCCATACATTGCAAGATTTGGACGTTAAAAACATCAGAGAGGAAGCAAGTGCAAGATGGCTACGCCCAAATGAAATCCTTGCAATACTATGTAACTACAAATATTTCATCATCCATGTCAAGCCAGTGAACTTGCCCAAAAGTGGAACCATTGTACTGTTTGACCGCAAGATGCTTAGGAATTTCCGCAAAGATGGGCATAATTGGAAGAAAAAGAAGGATGGGAAGACAGTAAAAGAAGCACATGAACACCTCAAAGTTGGTAATGTAGAAAGGATACATGTATACTATGCCCATGGCCTTGATAATCCAACCTTTGTCCGTCGGTGTTATTGGCTCCTTGATAAGAGTCTCGAACACATTGTCCTCGTTCATTACCGTGAAACACAAGAGAGTTCTCCATCCACATCTATGAATTCAAATTCTGGTTCTGTCTCTAACCCGTCTAGTCCTTGGCTTTTATCAGAAGAACTTGACTCCAGGGCTAATCATGTTTGTTCTGTTGGTAAAACTGAACTGTCAGAGCCTAGTGACACTGCAACAGTCATGACTCACGAACAACGGCTTCATGAGATCAATACACTTGAGTGGGATGAACTTCTTGTGACAAACGAGCCTTTCAACCCTGTTATACCTAAAGGAGAAAGACTTTCATGCTTTGACCAACAGAATGAAGTCCCAATAAATGTGGCCATCAATTTATTTGGGGACATGTCTTCACTTAATAATCCAGTTGAGTCAGTTGGTAGTACCAACAGCAATATCAGTTTTTCGGGGAGTACCAATATGTCATTAACGGGTGGTCAAACGAATTTGAATGTGAAGAGTAAGGGATCTGTTCCAGTAAACTCTGTTAATACATATGGCAATTTGTTAAATGATGGATTGCAAAGTCAGGACAGCTTTGGACGATGGATAAATGAAGTCATCACTGAATCTTCTGGTTCAGTCATTGATCCTGCTGTTGAGCCTCCCATTTCACCCATGTACAATTCCTATACTGATCTGGCATTAGATCATCATCAATCTTCTGTTATGGAGCAAATTTTTAACATAACTGATGTCTCGCCTGCGTGGGCCTTTTCTACAGAAAAAACAAAGATTCTAATCACTGGATTTTTTCACAATGAGTACGTACATCTGGCAAAGTCCAATATATTGGTCGTGTGTGGTGATACTAGTGTTAATGTTGATTTTGTTCAACCTGGAGTTTATCGCTGTCTGGTACAGCCGCATTCACCAGGACTAGTACATTTCTTCGTGAGCTTAGATGGCCACAAGCCTATTAGTCAAGTTCTGAATTTTGAGTATCGTGCACCACATTTACAAGAGCTTGTAGTTGCTTCAGAACAGAGCTACAAGTGGGAGGAGTTTCAAGTTCAGATGCGACTTGCTCATCTGTTGTTTTCTACGTCCAAAAGCCTGAGCATCATGTCGACTAAATTGACACCCATTGCCCTGAATGAGGCCCAAAAATTTGCCGTCAAAACTTCTGACATTTCTGATAGTTGGATTTATTTGTTGAAGTCAGTCAAAGAAAATAAAACTCAATTTCCACAAGCAAGAGATGGTGTTCTTGAGATCATTTTGAGAAGCAGGTTAAGGGAATGGTTGATAGAAAGAATCGCTGAAGGCTCAAAGAAAAGCACTGAGTTTGATGTTAAAGGTCAAGGAGTATTCCACTTGTGTGCCATATTGGGATATACCTGGGCTGTACACCTATTTGTCTGGTCTGGTTTATCAATAGATTTTCGAGATAAATCTGGATGGACAGCTCTTCACTGGGCAGCTTATTATGGGAGGGAGAAAATGGTAGCTGTTCTTTTATCAGTGGGGGCTAAGCCAAACTTGGTCACTGATCCCACATCGAAAAACCCTGGGGGTTGCACCGCTGCAGATCTTGCATCTATGAATGGTTATGATGGCTTAGCTGCTTATCTTTCAGAGAAGGCTTTGATATCACATTTTAACGAGATGAGCTTGGCCGGAAATGTTAGTGGTTCGTTGGAAATTAGTACAACAACCGATACAATTAATCCTGATAGCATCAGTGAGGAGCAGATGTATATAAAAGATACATTAGCAGCTTACCGAACAGCAGCTGATGCGGCAGCACGCATACAAGCTGCATTCCGTGAGCATTCTTTAAAGCTAAGGACTAGAGCAGTTGAATTCTCTACCCCTGAAGATGAAGCACGTGGTATTATTGCAGCCATGAAAATCCAACATGCCTACCGCAACTTTGAGACACGAAAAAGGATGGCAGCTGCTGCTCGTATTCAGTACAGATTTCGCACGTGGAAGATCCGCAAAGAGTTCCTACATATGCGTCGTCAAGCTATTAGGATTCAAGCTGCATTTAGAGGCTTCCAAGTGCGGAGGCAGTATTGCAAGATTGTTTGGTCAGTAGGAGTACTCGAGAAAGCTATACTGCGCTGGCGTCTTAAGAGAAAAGGTTTTCGTGGGCTTCAGGTTGCACCCACTGAAGTGGCAGAACAGCAGGAAAGTGACGCAGTAGAGAACTTCTACCATGTTAGTCAAAAACAAGCAGAAGAGCGAGTTGAGAGAGCTGTTGTGCGGGTTCAGGCCTTGTTTCGATCGAAGAAAGCACAAGAAGAGTATCGTAGGATGAAGTTAACCTACGATGAAGCAGCGCTGGAATATGAAGTACTTACACATCCTGATACGATAGCATAA 2757 42.29 MSLSMKVDVPGTLVGSEIHGFHTLQDLDVKNIREEASARWLRPNEILAILCNYKYFIIHVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNVERIHVYYAHGLDNPTFVRRCYWLLDKSLEHIVLVHYRETQESSPSTSMNSNSGSVSNPSSPWLLSEELDSRANHVCSVGKTELSEPSDTATVMTHEQRLHEINTLEWDELLVTNEPFNPVIPKGERLSCFDQQNEVPINVAINLFGDMSSLNNPVESVGSTNSNISFSGSTNMSLTGGQTNLNVKSKGSVPVNSVNTYGNLLNDGLQSQDSFGRWINEVITESSGSVIDPAVEPPISPMYNSYTDLALDHHQSSVMEQIFNITDVSPAWAFSTEKTKILITGFFHNEYVHLAKSNILVVCGDTSVNVDFVQPGVYRCLVQPHSPGLVHFFVSLDGHKPISQVLNFEYRAPHLQELVVASEQSYKWEEFQVQMRLAHLLFSTSKSLSIMSTKLTPIALNEAQKFAVKTSDISDSWIYLLKSVKENKTQFPQARDGVLEIILRSRLREWLIERIAEGSKKSTEFDVKGQGVFHLCAILGYTWAVHLFVWSGLSIDFRDKSGWTALHWAAYYGREKMVAVLLSVGAKPNLVTDPTSKNPGGCTAADLASMNGYDGLAAYLSEKALISHFNEMSLAGNVSGSLEISTTTDTINPDSISEEQMYIKDTLAAYRTAADAAARIQAAFREHSLKLRTRAVEFSTPEDEARGIIAAMKIQHAYRNFETRKRMAAAARIQYRFRTWKIRKEFLHMRRQAIRIQAAFRGFQVRRQYCKIVWSVGVLEKAILRWRLKRKGFRGLQVAPTEVAEQQESDAVENFYHVSQKQAEERVERAVVRVQALFRSKKAQEEYRRMKLTYDEAALEYEVLTHPDTIA 918
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15842323 15858058 + MC07g0824 Mch7g1223 693561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch7g1223 918 Pfam CG-1 domain 35 148 IPR005559 GO:0003677(InterPro)
Mch7g1223 918 Pfam Ankyrin repeats (3 copies) 580 670 IPR002110 GO:0005515(InterPro)
Mch7g1223 918 Gene3D Immunoglobulins 365 461 IPR013783 -
Mch7g1223 918 SUPERFAMILY Ankyrin repeat 570 670 IPR036770 -
Mch7g1223 918 Coils Coil 887 907 - -
Mch7g1223 918 Gene3D - 773 820 - -
Mch7g1223 918 ProSiteProfiles IQ motif profile. 773 799 - -
Mch7g1223 918 ProSiteProfiles IQ motif profile. 796 820 - -
Mch7g1223 918 ProSiteProfiles CG-1 DNA-binding domain profile. 29 155 IPR005559 GO:0003677(InterPro)
Mch7g1223 918 SMART CG_1_2 32 150 IPR005559 GO:0003677(InterPro)
Mch7g1223 918 ProSiteProfiles Ankyrin repeat region circular profile. 608 636 - -
Mch7g1223 918 SMART ANK_2a 608 637 IPR002110 GO:0005515(InterPro)
Mch7g1223 918 SMART ANK_2a 647 678 IPR002110 GO:0005515(InterPro)
Mch7g1223 918 Pfam IPT/TIG domain 372 457 IPR002909 -
Mch7g1223 918 Pfam IQ calmodulin-binding motif 798 816 IPR000048 GO:0005515(InterPro)
Mch7g1223 918 SUPERFAMILY E set domains 371 458 IPR014756 -
Mch7g1223 918 MobiDBLite consensus disorder prediction 150 171 - -
Mch7g1223 918 Gene3D - 525 671 IPR036770 -
Mch7g1223 918 SMART iq_5 772 794 IPR000048 GO:0005515(InterPro)
Mch7g1223 918 SMART iq_5 719 741 IPR000048 GO:0005515(InterPro)
Mch7g1223 918 SMART iq_5 795 817 IPR000048 GO:0005515(InterPro)
Mch7g1223 918 SMART iq_5 873 895 IPR000048 GO:0005515(InterPro)
Mch7g1223 918 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 717 823 IPR027417 -
Mch7g1223 918 ProSiteProfiles IQ motif profile. 875 903 - -
Mch7g1223 918 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 28 902 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Mch7g1223 918 ProSiteProfiles Ankyrin repeat profile. 608 640 IPR002110 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch7g0078 Mch-Chr7:825849 Mch7g1223 Mch-Chr7:15842323 6.62E-78 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43744 PF03859 CG-1 1.10E-45 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch7g1223 K21596 - csv:101211298 1470.68