Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch7g1239 ATGGGAACCCCACCAGCGGAGGAGCTTCTGAGGAAGATCCGAGAGCTGGAGGAGGGTCAAGCCCATCTCAAGAAAGAGATGTCCAAACTTCTTCTCTCCGGAACTCCCGCAGATTCGAATTCCGAGCACCAAATCCACCATCACCATCACCATCAGCGCTCGCAATCAATCTCGCCGCAGCGCTCCAGATTTGCTACGGCCAGAAGGAGAGGCGGCGCTTCCGGTGGTTTAGACGCCGCCGCCGCAGCCTGGAAGAAAGGCTCTGCCTCGTTCCGACATTCTTCCCCACTTCAGAGGGAGAGTAGGACCCGTGACCCTTTGAATGCCGGCGGCGGCGGCGGCTGCTCTGGCCCCGCCGCGGTGAATTTCACCAATAAGCAGTATCTGAATATCTTGCAGTCAATGGGACAGTCTGTTCATATTTTTGACCTTAATTGTCGCATAATTTATTGGAACCGAGCTGCCGAAACTGTGTATGGATATTCTGCAGCGGAGGCTCTGGGCCAGGATGCCGTCGGGCTTCTCGTAGATCCCGAAGACTTTGCCATTGCGAATGATGTACTCCGTTTTGTCACGGCGGGGGAGAATTGGACTGGCCAGTTCCCTGTAAAGAACAAGATGGGGCAGAAGTTTGTAGTTGTTGCAAATAACTCTCCGTTCTACGACGATGGCGCATTGGTCGGGATTATCTGCGTATCGAGCGATTCACGACCATTTCAAGAATTGAAGATTCCTCTAGCAGTTGGTTCAAAACAGCAGGATGGAGCAGATTCGAGCCTGGTCCGATCAAGAAGCACTGTTTCAACTAAACTTGGTCTTGATCCTCAGCAGCCTCTTCAAGTGGCTATTGCTTCAAAGATATCGAATTTGGCATCAAAGGTAAGCAACAAAGTGAAGTCCAAGATTCGAACTGGAGAAAACAGCTCGGATCGTGAAGGTGGAAGTGGAGATAGTTATCACTCTGATCATGGCTTTCCAGATGCAGTTCTTTGTGACCATCGGGAGGATGCAAATTCGAGTGGAGCTAGCACACCTCGTGGAGATTCGACAGCACACGGTGCATTTTCCCAAATTGAAGAGAAGTGCTCTGGCAAACTGGTGAGGGATTCCGGTGATGAGGTTAAAGGAAAACCTACAATCCAGAAGATCTTATCCTCAAAAGCAGAAGAGTGGATTGCTAAGAAGGGCTTATCGTGGCCGTGGAAAGGGACCGAGCAGGAAGGATCTGAAGCAAGGACTGCCCGTTTCGTTTGGCCCTGGGTACAAAATGATCAAGAAGCCGAACCGGGCAACCATAAGAGTTTCTCTTCAGCTGGGAAACTAGAAATGCAGCAAAACGACGGTCATCGAGCAGGCAACAACGAAGCCTCGGGGTCCTGGTCATCGTTCAATGTTAACAGCACTAGCAGTGCCAGTAGCTGTGGAAGTACCAGCAGCAGTGCTGTTAACAAGGTTGACATGGAAACCGACTGCTTGGATTATGAAATATTGTGGGAAGACCTTACAATTGGGGAGCAAATAGGGCAAGGTTCTTGTGGAACCGTCTATCATGCGCTGTGGTATGGATCAGATGTTGCCGTTAAAGTGTTTTCCAAACAAGAGTATTCAGATGATGTGATTCTCTCCTTCAGACAGGAGGTATCCCTGATGAAAAAGCTTAGGCATCCCAATATTCTTCTCTTTATGGGAGTTGTGACTTCACCCCAGCGTCTCTGCATCGTCACGGAATTCCTTCCACGTGGAAGTTTGTTTCGTTTACTACAGAGGAACTCTGGCAAATTAGACTGGAGGCGCCGCACTCATATGGCTTTGGACATTGCACGAGGCATGAACTATCTTCATCATTGTAATCCACCTATTATTCACAGAGATTTGAAATCGTCAAATCTGTTAATTGATAAAAACTGGACTGTGAAGGTTGGCGATTTCGGTCTATCTCGTCTCAAGCGCGACACTTATCTAACAACTAAGACCGGGAAGGGAACGCCTCAATGGATGGCGCCCGAAGTTCTTCGTAACGATCCCTCTGATGAGAAGTCTGACATATACAGTTTTGGAGTCATATTGTGGGAGCTTGCGACCGAGAAGATCCCTTGGGAAAATCTCAATTCAATGCAGGTAATCGGTGCTGTGGGGTTCATGAACCAACGACTTGAAATCCCCAAAGATGTGGATCCACAATGGGCTTCTATAATTGAAAGCTGCTGCAACAGCGAACCCGCAAACCGGCCTTCATTCCAGGTTCTGATAGATAGGCTCAGAGAGTTGCAGAGGAAGTATGCAATTCAATTACAGGCAGCTCGTTCTGGTGGAGATAACAACCACCCTCAAAAGGAAACATAG 2343 48.78 MGTPPAEELLRKIRELEEGQAHLKKEMSKLLLSGTPADSNSEHQIHHHHHHQRSQSISPQRSRFATARRRGGASGGLDAAAAAWKKGSASFRHSSPLQRESRTRDPLNAGGGGGCSGPAAVNFTNKQYLNILQSMGQSVHIFDLNCRIIYWNRAAETVYGYSAAEALGQDAVGLLVDPEDFAIANDVLRFVTAGENWTGQFPVKNKMGQKFVVVANNSPFYDDGALVGIICVSSDSRPFQELKIPLAVGSKQQDGADSSLVRSRSTVSTKLGLDPQQPLQVAIASKISNLASKVSNKVKSKIRTGENSSDREGGSGDSYHSDHGFPDAVLCDHREDANSSGASTPRGDSTAHGAFSQIEEKCSGKLVRDSGDEVKGKPTIQKILSSKAEEWIAKKGLSWPWKGTEQEGSEARTARFVWPWVQNDQEAEPGNHKSFSSAGKLEMQQNDGHRAGNNEASGSWSSFNVNSTSSASSCGSTSSSAVNKVDMETDCLDYEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFRQEVSLMKKLRHPNILLFMGVVTSPQRLCIVTEFLPRGSLFRLLQRNSGKLDWRRRTHMALDIARGMNYLHHCNPPIIHRDLKSSNLLIDKNWTVKVGDFGLSRLKRDTYLTTKTGKGTPQWMAPEVLRNDPSDEKSDIYSFGVILWELATEKIPWENLNSMQVIGAVGFMNQRLEIPKDVDPQWASIIESCCNSEPANRPSFQVLIDRLRELQRKYAIQLQAARSGGDNNHPQKET 780
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15937435 15942709 + MC07g0839 Mch7g1239 693577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch7g1239 780 MobiDBLite consensus disorder prediction 298 357 - -
Mch7g1239 780 Pfam Protein tyrosine and serine/threonine kinase 501 753 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch7g1239 780 ProSiteProfiles Protein kinase domain profile. 501 761 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch7g1239 780 Gene3D Phosphorylase Kinase; domain 1 494 578 - -
Mch7g1239 780 CDD STKc_MAP3K-like 507 753 - -
Mch7g1239 780 SMART pas_2 126 193 IPR000014 -
Mch7g1239 780 MobiDBLite consensus disorder prediction 337 351 - -
Mch7g1239 780 Coils Coil 6 26 - -
Mch7g1239 780 Gene3D Transferase(Phosphotransferase) domain 1 579 779 - -
Mch7g1239 780 MobiDBLite consensus disorder prediction 299 318 - -
Mch7g1239 780 ProSitePatterns Serine/Threonine protein kinases active-site signature. 620 632 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch7g1239 780 PANTHER SERINE-THREONINE PROTEIN KINASE 69 756 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Mch7g1239 780 SUPERFAMILY Protein kinase-like (PK-like) 487 751 IPR011009 -
Mch7g1239 780 CDD PAS 135 235 IPR000014 -
Mch7g1239 780 NCBIfam PAS domain S-box protein 126 235 IPR000014 -
Mch7g1239 780 FunFam PAS domain-containing protein tyrosine kinase 494 578 - -
Mch7g1239 780 PRINTS Tyrosine kinase catalytic domain signature 614 632 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch7g1239 780 PRINTS Tyrosine kinase catalytic domain signature 575 588 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch7g1239 780 PRINTS Tyrosine kinase catalytic domain signature 724 746 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch7g1239 780 PRINTS Tyrosine kinase catalytic domain signature 680 702 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch7g1239 780 PRINTS Tyrosine kinase catalytic domain signature 661 671 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch7g1239 780 Pfam PAS fold 127 233 IPR013767 GO:0006355(InterPro)
Mch7g1239 780 ProSiteProfiles PAS repeat profile. 124 195 IPR000014 -
Mch7g1239 780 SUPERFAMILY PYP-like sensor domain (PAS domain) 128 235 IPR035965 -
Mch7g1239 780 SMART serkin_6 501 761 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch7g1239 780 FunFam PAS domain-containing protein tyrosine kinase family protein 579 770 - -
Mch7g1239 780 Gene3D PAS domain 136 238 - -
Mch7g1239 780 MobiDBLite consensus disorder prediction 33 114 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1975 Mch-Chr1:19388249 Mch7g1239 Mch-Chr7:15937435 4.92E-43 dispersed
Mch6g0657 Mch-Chr6:4476262 Mch7g1239 Mch-Chr7:15937435 1.13E-46 dispersed
Mch6g1662 Mch-Chr6:18444872 Mch7g1239 Mch-Chr7:15937435 8.23E-104 dispersed
Mch7g1239 Mch-Chr7:15937435 Mch8g2678 Mch-Chr8:30062394 1.95E-47 dispersed
Mch7g1239 Mch-Chr7:15937435 Mch1g0900 Mch-Chr1:12340518 1.10E-99 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77560 PF07714 PK_Tyr_Ser-Thr 6.90E-67 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch7g1239 - - - 0.0