Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0005 ATGGCTGCTCGGAGGATATCCTCGCTCTTATCTCGTTCCCTCGCTTCTTCATCTGCTCTCCTTTCCAAAGGGAGGAGACCTTCCGGTGGCAGATATAGCACTGCGGCTGCTGTTGAAGACCCGATTACTCCATCTGTGAAAGTAAATTACACCCAGCTATTAATCAACGGACAGTTTGTCGACTCGGTGTCAGGAAAAACTTTTCCTACGCTGGACCCAAGGACTGGGGAAGTGATTGCGCAAGTGGCTGAAGGTGACGCCAGAGATATTGATCTTGCAGTTTCCGCTGCACGCAACGCATTTGATGAAGGGCCTTGGCCTAGGATGACTGCTTATGAAAGATCGAAGATACTTCTGCGATTTGCTGATTTGGTTGAAAAGCATGCTGATGAAGTTGCTGCCCTGGAGACTTGGGACAACGGGAAGACCTTCGAACAGTCGGTCAAACTGGAAGTCCCAATGTTTGTACGCCTGTTTCGATACTACGGTGGATGGGCCGATAAGATTCATGGACTCACTGTTCCAGCCGATGGCTCATATCATGTGCAGACCTTGCACGAACCAATTGGCGTTGCGGGTCAGATAATTCCATGGAACTTTCCTCTGCTCATGTTTGCCTGGAAGGTTGGTCCAGCACTAGCATGTGGCAATACTATTGTTCTCAAGACAGCCGAGCAGACACCTTTGTCTGGTCTCTTTGTGGCTAAGCTATTGCACGAGGCTGGACTTCCTGAGGGCGTTCTCAACATCGTTTCTGGTTATGGGCCCACCGCTGGTGCTGCTCTTGCCAGCCATATGGAAGTTGATAAGCTTGCTTTTACTGGATCGACGGAAACAGGGAAGATTGTACTTGAACTAGCTTCAAAGAGCAATCTGAAGCCAGTAACGTTGGAGCTTGGCGGAAAATCCCCTTTCATTGTATGTGAGGATGCTGATGTGGATAAGGCTGTCGAGATGGCACACTTTGCTCTCTTCTTCAACCAGGGACAATGCTGCTGTGCTGGTTCTCGTACTTTTGTTCATGAAAAAGTATATGATGAGTTTCTAGAAAAAGCTAGGAAACGAGCTGCAAACCGTGTTGTTGGTGATCCATTCCTGGGTGGAATTGAGCAAGGTCCTCAGGTCGATGGCGAACAATTCAAAAAGATTTTGAGATATATAAAATATGGGATTGAAGGTGGAGCCACTCTTGAAGCTGGAGGAGAGAGGTTTGGTTCCAAGGGTTACTATATCCAACCAACAGTTTTCTCAGACGTTAAGGATGACATGAAAATTGCACAGGAGGAGATTTTTGGTCCTGTACAGACAATCTTGAAATTCAAAGAGCTTGAGGAGGTGATAAGGAGAGCAAATGCTAGTCGCTATGGGCTGGCCGCTGGGATCTTTACTCACAATATCGACACAGCCAACAGGCTTACACGTGCGCTGAGAGTTGGGTCTGTGTGGATCAATTGCTTTGACATATTTGATGCCGCAATTCCTTTTGGTGGGTACAAGATGAGCGGACATGGACGAGAAAAGGGCATCTACAGCCTCAGCAATTACCTGCAAGTGAAGGCTGTTGTCACTCCTTTGAACAACCCTGCTTGGCTTTAG 1596 47.68 MAARRISSLLSRSLASSSALLSKGRRPSGGRYSTAAAVEDPITPSVKVNYTQLLINGQFVDSVSGKTFPTLDPRTGEVIAQVAEGDARDIDLAVSAARNAFDEGPWPRMTAYERSKILLRFADLVEKHADEVAALETWDNGKTFEQSVKLEVPMFVRLFRYYGGWADKIHGLTVPADGSYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLSGLFVAKLLHEAGLPEGVLNIVSGYGPTAGAALASHMEVDKLAFTGSTETGKIVLELASKSNLKPVTLELGGKSPFIVCEDADVDKAVEMAHFALFFNQGQCCCAGSRTFVHEKVYDEFLEKARKRAANRVVGDPFLGGIEQGPQVDGEQFKKILRYIKYGIEGGATLEAGGERFGSKGYYIQPTVFSDVKDDMKIAQEEIFGPVQTILKFKELEEVIRRANASRYGLAAGIFTHNIDTANRLTRALRVGSVWINCFDIFDAAIPFGGYKMSGHGREKGIYSLSNYLQVKAVVTPLNNPAWL 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 44312 51615 + MC08g0005 Mch8g0005 693626

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0005 531 SUPERFAMILY ALDH-like 47 526 IPR016161 GO:0016491(InterPro)
Mch8g0005 531 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 47 523 - GO:0004029(PANTHER)
Mch8g0005 531 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 301 490 IPR016163 GO:0016620(InterPro)
Mch8g0005 531 CDD ALDH_F2BC 48 523 - -
Mch8g0005 531 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 297 304 IPR029510 GO:0016491(InterPro)
Mch8g0005 531 FunFam Mitochondrial aldehyde dehydrogenase 2 303 492 - -
Mch8g0005 531 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 55 519 IPR016162 GO:0016491(InterPro)
Mch8g0005 531 Pfam Aldehyde dehydrogenase family 59 521 IPR015590 GO:0016491(InterPro)
Mch8g0005 531 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 325 336 IPR016160 GO:0016491(InterPro)
Mch8g0005 531 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 55 328 - -
Mch8g0005 531 FunFam Aldehyde dehydrogenase, putative 493 519 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0005 K00128 - - csv:101202756 972.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1365 Mch-Chr1:15591048 Mch8g0005 Mch-Chr8:44312 3.14E-44 transposed
Mch2g0759 Mch-Chr2:5207277 Mch8g0005 Mch-Chr8:44312 1.56E-104 transposed
Mch4g0868 Mch-Chr4:6230668 Mch8g0005 Mch-Chr8:44312 1.06E-55 transposed
Mch6g0791 Mch-Chr6:5504644 Mch8g0005 Mch-Chr8:44312 1.44E-206 transposed
Mch7g1231 Mch-Chr7:15892344 Mch8g0005 Mch-Chr8:44312 2.78E-66 transposed
Mch6g0160 Mch-Chr6:1068521 Mch8g0005 Mch-Chr8:44312 2.19e-316 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch6g0791 . 15 502 Aldehyde Dehydrogenase Gene Family AT3G24503 74.4 1.2e-214 742.7
Mch8g0005 . 30 532 Aldehyde Dehydrogenase Gene Family AT3G24503 54.6 1.0e-160 563.5
Mch6g0160 . 59 544 Aldehyde Dehydrogenase Gene Family AT3G24503 55.0 3.4e-156 548.5
Mch6g0160 . 1 544 Aldehyde Dehydrogenase Gene Family AT3G48000 79.8 2.5e-258 887.9
Mch8g0005 . 1 532 Aldehyde Dehydrogenase Gene Family AT3G48000 76.1 1.3e-246 849.0
Mch6g0791 . 17 502 Aldehyde Dehydrogenase Gene Family AT3G48000 57.0 1.5e-165 579.7
Mch8g0005 . 1 375 Aldehyde Dehydrogenase Gene Family AT1G23800 78.0 8.0e-172 600.1
Mch6g0160 . 1 387 Aldehyde Dehydrogenase Gene Family AT1G23800 74.7 1.1e-168 589.7
Mch6g0791 . 17 345 Aldehyde Dehydrogenase Gene Family AT1G23800 56.5 7.1e-104 374.4
Mch11g0840 . 8 479 Aldehyde Dehydrogenase Gene Family AT4G34240 65.7 8.6e-182 633.6
Mch11g0840 . 69 479 Aldehyde Dehydrogenase Gene Family AT1G44170 72.3 3.5e-178 621.3
Mch10g0749 . 61 476 Aldehyde Dehydrogenase Gene Family AT1G44170 51.7 7.6e-117 417.5
Mch2g0136 . 64 478 Aldehyde Dehydrogenase Gene Family AT1G44170 50.4 4.2e-115 411.8
Mch10g0749 . 1 479 Aldehyde Dehydrogenase Gene Family AT4G36250 64.1 1.0e-186 649.8
Mch2g0136 . 2 480 Aldehyde Dehydrogenase Gene Family AT4G36250 54.5 7.8e-158 553.9
Mch2g0759 . 39 539 Aldehyde Dehydrogenase Gene Family AT1G79440 76.3 5.2e-232 800.4
Mch4g0868 . 7 494 Aldehyde Dehydrogenase Gene Family AT2G14170 83.4 5.5e-238 820.5
Mch1g1365 . 177 685 Aldehyde Dehydrogenase Gene Family AT2G14170 60.2 4.3e-182 634.8
Mch6g0182 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 81.2 2.3e-250 861.3
Mch6g0182 . 1 504 Aldehyde Dehydrogenase Gene Family AT3G48170 81.2 7.9e-254 872.8
Mch8g2991 . 1 523 Aldehyde Dehydrogenase Gene Family AT2G24270 85.5 9.9e-265 909.1
Mch3g1524 . 37 557 Aldehyde Dehydrogenase Gene Family AT5G62530 79.9 8.4e-257 882.9
Mch7g1231 . 56 642 Aldehyde Dehydrogenase Gene Family AT3G66658 77.2 1.2e-277 952.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001596 2 4 2 1 4 2 3 2 2 1 2 2 3 1 2 3 2 3 3 2 2 3 2 2 2 2 2 2 3 5 71