Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0035 ATGGAAACGCTTTCTCTGAGTTTGCTCTCCAAAGCGGCTCTTCTAGTTTTGGCGCTCCTGGAACTTGCTTCCGCTACACTTTCCCCTTCTGGTGTAAACTACGAAGTCGTAGCTTTGATGGCCATAAAAAGTGATTTAATAGATCCCCATAATGTTCTGGAGAATTGGGATTCTAACTCTGTGGATCCTTGTAGCTGGAGAATGGTCACTTGTTCTCCAGACGGATATGTTTCTGCTTTGGGCCTACCAAGCCAGAGTTTGTCTGGCGTCTTATCACCGGGGATAGGAAACCTCAGTAAGCTGGAATCAGTGTTGCTTCAGAACAATGACATTGCAGGGCCAATTCCTGCAACCATCGGAAAGTTAGAGAATCTTCAGACTCTTGATCTCTCCAACAATGTATTTAGCGGTGAAATACCCAGTTCCCTAGGGGACTTAAAGAAGCTGAACTATTTGCGACTAAATAACAACAGCCTAACTGGACCTTGTCCCGAGACTCTATCCAAAGTTCAAGGTCTCACACTCGTGGACCTTTCCTATAACAACTTGAGTGGCTCCTTGCCCAAAATATCAGCAAGAACATTCAAAATTGTTGGCAACCCTTTGATATGTGGCCCAAACAACTGCTCTGCCATCTTTCCAGAGCCGCTGTCCTTTTCCTCAGATGCTCTCGATGGAAATTTGGGATTTGGTAAGAGCCACCGAAAGGCAATTGCTTTTGGAGCAAGTTTTAGTGCTGCTTTTATTGTATTAGTCCTTATTGGGCTAGTTATCTGGTGGAGATACAGACACAACCAGCAGATTTTCTTTGATGTAAATGATCAATATGACCCAGAGGTACGTTTGGGTCATTTGAGAAGGTACACATTCAAGGAACTTCGGGCAGCAACGGATCATTTCAACTCAAAGAATATCTTGGGAAGAGGTGGTTTTGGAATTGTGTACAAGGGATGCTTAAATGATGGGACTCTGGTAGCGGTTAAAAGGTTGAAGGATTATAACACCGCTGGTGGGGAGATCCAATTTCAGACTGAAGTAGAAATGATAAGCTTAGCTGTACATCGAAACCTTCTCAGGCTTTTTGGCTTCTGTTCGACTGAAAGTGAAAGACTTCTGGTTTACCCATTCATGCCCAATGGAAGCGTTGCATCTCGTCTAAGAGATCATATACATGGGCAACCGGCTCTAGATTGGGCAATGAGAAAGAGAATAGCCTTGGGTACAGCTAGAGGATTGGTGTACTTGCATGAGCAGTGCGACCCCAAAATTATCCATCGTGATGTGAAGGCAGCCAACATTCTCCTTGATGAAGATTTTGAGGCGGTTGTTGGGGATTTCGGGTTGGCCAAACTTTTGGATCACAGGGATTCTCATGTGACTACGGCGGTGCGTGGTACTGTTGGCCATATTGCTCCAGAGTACTTATCAACAGGACAGTCATCAGAAAAGACGGATGTTTTTGGGTTTGGAATCTTGCTTTTGGAGTTAATTACCGGTCAGAAGGCTCTGGATTTCGGTCGAGGAGCAAACCAGAAAGGCGTGATGCTAGACTGGGTGAAAAAGCTGCATCAAGAAGGAAAGCTGAATGTAATGGTGGATAAGGATTTAAGAGGCAAGTTTGACAGAGTTGAGTTAGAAGAAATGGTTCAGGTTGCGCTCTTGTGCACTCAATTCAATCCTTGTCACCGACCAAAAATGTCTGAAGTATTAAAAATGTTGGAAGGCGATGGTTTAGCTGAGAAATGGGAAGCATCACAGCACATGGAGACGCCAAGATACCGAGCATGCGAGAATCCCCCTCAACGGTACTCAGATTATATAGAAGAATCTTCTCTGATAGTAGAAGCCATGGAGCTTTCGGGGCCCAGATGA 1872 44.71 METLSLSLLSKAALLVLALLELASATLSPSGVNYEVVALMAIKSDLIDPHNVLENWDSNSVDPCSWRMVTCSPDGYVSALGLPSQSLSGVLSPGIGNLSKLESVLLQNNDIAGPIPATIGKLENLQTLDLSNNVFSGEIPSSLGDLKKLNYLRLNNNSLTGPCPETLSKVQGLTLVDLSYNNLSGSLPKISARTFKIVGNPLICGPNNCSAIFPEPLSFSSDALDGNLGFGKSHRKAIAFGASFSAAFIVLVLIGLVIWWRYRHNQQIFFDVNDQYDPEVRLGHLRRYTFKELRAATDHFNSKNILGRGGFGIVYKGCLNDGTLVAVKRLKDYNTAGGEIQFQTEVEMISLAVHRNLLRLFGFCSTESERLLVYPFMPNGSVASRLRDHIHGQPALDWAMRKRIALGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDFGRGANQKGVMLDWVKKLHQEGKLNVMVDKDLRGKFDRVELEEMVQVALLCTQFNPCHRPKMSEVLKMLEGDGLAEKWEASQHMETPRYRACENPPQRYSDYIEESSLIVEAMELSGPR 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 204411 212807 + MC08g0032 Mch8g0035 693656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0035 623 FunFam Somatic embryogenesis receptor-like kinase 1 377 593 - -
Mch8g0035 623 ProSiteProfiles Protein kinase domain profile. 300 583 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch8g0035 623 Gene3D Phosphorylase Kinase; domain 1 269 376 - -
Mch8g0035 623 SUPERFAMILY Protein kinase-like (PK-like) 284 580 IPR011009 -
Mch8g0035 623 Gene3D Ribonuclease Inhibitor 32 211 IPR032675 -
Mch8g0035 623 FunFam Somatic embryogenesis receptor kinase 1 269 376 - -
Mch8g0035 623 Pfam Leucine rich repeat 100 159 IPR001611 GO:0005515(InterPro)
Mch8g0035 623 SUPERFAMILY L domain-like 33 194 - -
Mch8g0035 623 SMART serkin_6 300 573 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch8g0035 623 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Mch8g0035 623 Pfam Protein tyrosine and serine/threonine kinase 303 573 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch8g0035 623 FunFam Putative LRR receptor-like serine/threonine-protein kinase 32 212 - -
Mch8g0035 623 Gene3D Transferase(Phosphotransferase) domain 1 377 593 - -
Mch8g0035 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch8g0035 623 ProSitePatterns Protein kinases ATP-binding region signature. 306 328 IPR017441 GO:0005524(InterPro)
Mch8g0035 623 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 623 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0718 Mch-Chr10:4959368 Mch8g0035 Mch-Chr8:204411 2.11E-168 dispersed
Mch1g1928 Mch-Chr1:19132348 Mch8g0035 Mch-Chr8:204411 1.04E-189 dispersed
Mch2g1499 Mch-Chr2:11400069 Mch8g0035 Mch-Chr8:204411 3.56E-129 dispersed
Mch3g1516 Mch-Chr3:17303774 Mch8g0035 Mch-Chr8:204411 2.56E-77 dispersed
Mch6g0211 Mch-Chr6:1415611 Mch8g0035 Mch-Chr8:204411 5.15E-75 dispersed
Mch6g0588 Mch-Chr6:3988512 Mch8g0035 Mch-Chr8:204411 1.60E-199 dispersed
Mch8g0035 Mch-Chr8:204411 Mch9g2027 Mch-Chr9:21513695 2.14E-173 dispersed
Mch8g0035 Mch-Chr8:204411 Mch4g2400 Mch-Chr4:25103365 2.15E-234 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77564 PF00069 Pkinase 6.30E-44 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0035 - - - 0.0