Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch8g0036 | ATGCTTCGTCTCGCCATCTCACCAATTCCCGTGCCTTCTTTTCTTCTTCCATCCTTCCTTGAAATGGAGGAGAATATCGACATGTTCGCCATCCGCTCCACTGCGGATTACTCGGCCAAGTCGTTCTTATCGCCGGACAATCTCCTCGACTATCACAGCTTCCTTTCATCCACAAGCTTCCGCGATCGGATTCCCATCTTCGGATCCCATGAATTGCCGTCGGCTGCCTCCGCCGTATCCGAAGCTGAGGCACCTTCCATCACTCCAGCTTTTCCGCTCCAACCAGATGTTCTTAGCGTCATCAAGGCCAAGGCCAAAATTGTCTCTCATCCTACCTATCCTCGTCTGCTTCACGCTTATATTGACTGCCAGAAGGTAGGAGCTCCTCCGGAGATAGCTGGCTTGTTGGAGGAAATCCGGCGAGAAAACAAGCAACACGCTATTTCCACGTGCTTCGGAGCCGATCCCGAGCTCGACGAGTTCATGGAAACATACTGTGAGATGCTGGTAAAGTATAAATCAGATCTTTCAACGCCTTTTTATGAAGCGTCGTCCTTCTTGAACAACATCGAACTGCAACTTAGCAGCCTCTGTGCTGGTGCCTCCGCCAGAAGCCCTTCCAATGAGGATGCTATGTCATCGGATGATGAGCTTAATTGGGGAGAGAGGGAATTACAAGGTGCTCAAATGAGTTTAGAAGACAAAAGTCTTAAAGATATGCTCTTAAGTAGATTTGGCAGCCACATTGGAACCTTGAAGTTGGAGTTTTCAAAGAAGAAGAAGAAAGGAAAACTACCTAAAGAAGGAAGGAAAGTACTGCACGAGTGGTGGAATGTTCACTATAAATGGCCATATCCTACGGAAGCTGATAAAATTGCGCTGGCAGAGACAACGGGACTAGATCCCAAGCAAATTAACAATTGGTTTATTAACCAACGTAAGCGGCACTGGAAGCCTTCTGAAAGCATGCAATTGGCAACTGTGGACAATCTGCCTGAACAATTTTGCGGTAGTCTCGACTCTTGA | 1026 | 47.56 | MLRLAISPIPVPSFLLPSFLEMEENIDMFAIRSTADYSAKSFLSPDNLLDYHSFLSSTSFRDRIPIFGSHELPSAASAVSEAEAPSITPAFPLQPDVLSVIKAKAKIVSHPTYPRLLHAYIDCQKVGAPPEIAGLLEEIRRENKQHAISTCFGADPELDEFMETYCEMLVKYKSDLSTPFYEASSFLNNIELQLSSLCAGASARSPSNEDAMSSDDELNWGERELQGAQMSLEDKSLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLHEWWNVHYKWPYPTEADKIALAETTGLDPKQINNWFINQRKRHWKPSESMQLATVDNLPEQFCGSLDS | 341 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 217516 | 230217 | + | MC08g0033 | Mch8g0036 | 693657 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch8g0036 | 341 | Pfam | ELK domain | 237 | 257 | IPR005539 | GO:0003677(InterPro) | |
Mch8g0036 | 341 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 117 | 327 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Mch8g0036 | 341 | SMART | KNOX1_2 | 101 | 145 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Mch8g0036 | 341 | SMART | ELK_2 | 236 | 257 | IPR005539 | GO:0003677(InterPro) | |
Mch8g0036 | 341 | Gene3D | - | 255 | 327 | - | - | |
Mch8g0036 | 341 | SMART | KNOX2_2 | 148 | 199 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Mch8g0036 | 341 | CDD | homeodomain | 270 | 320 | IPR001356 | GO:0003677(InterPro) | |
Mch8g0036 | 341 | SUPERFAMILY | Homeodomain-like | 257 | 327 | IPR009057 | - | |
Mch8g0036 | 341 | Pfam | KNOX2 domain | 152 | 198 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Mch8g0036 | 341 | ProSiteProfiles | 'Homeobox' domain profile. | 256 | 319 | IPR001356 | GO:0003677(InterPro) | |
Mch8g0036 | 341 | SMART | HOX_1 | 258 | 323 | IPR001356 | GO:0003677(InterPro) | |
Mch8g0036 | 341 | ProSitePatterns | 'Homeobox' domain signature. | 294 | 317 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Mch8g0036 | 341 | Pfam | KNOX1 domain | 104 | 143 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Mch8g0036 | 341 | Pfam | Homeobox KN domain | 276 | 315 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch8g0036 | Mch-Chr8:217516 | Mch8g2772 | Mch-Chr8:30795674 | 1.01E-74 | dispersed | |
Mch6g0144 | Mch-Chr6:909398 | Mch8g0036 | Mch-Chr8:217516 | 8.19E-101 | wgd | |
Mch8g0036 | Mch-Chr8:217516 | Mch9g2260 | Mch-Chr9:22932845 | 8.59E-143 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43748 | PF03791 | KNOX2 | 1.20E-22 | No_clan | Mch | TF |
Pathway information
