Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0036 ATGCTTCGTCTCGCCATCTCACCAATTCCCGTGCCTTCTTTTCTTCTTCCATCCTTCCTTGAAATGGAGGAGAATATCGACATGTTCGCCATCCGCTCCACTGCGGATTACTCGGCCAAGTCGTTCTTATCGCCGGACAATCTCCTCGACTATCACAGCTTCCTTTCATCCACAAGCTTCCGCGATCGGATTCCCATCTTCGGATCCCATGAATTGCCGTCGGCTGCCTCCGCCGTATCCGAAGCTGAGGCACCTTCCATCACTCCAGCTTTTCCGCTCCAACCAGATGTTCTTAGCGTCATCAAGGCCAAGGCCAAAATTGTCTCTCATCCTACCTATCCTCGTCTGCTTCACGCTTATATTGACTGCCAGAAGGTAGGAGCTCCTCCGGAGATAGCTGGCTTGTTGGAGGAAATCCGGCGAGAAAACAAGCAACACGCTATTTCCACGTGCTTCGGAGCCGATCCCGAGCTCGACGAGTTCATGGAAACATACTGTGAGATGCTGGTAAAGTATAAATCAGATCTTTCAACGCCTTTTTATGAAGCGTCGTCCTTCTTGAACAACATCGAACTGCAACTTAGCAGCCTCTGTGCTGGTGCCTCCGCCAGAAGCCCTTCCAATGAGGATGCTATGTCATCGGATGATGAGCTTAATTGGGGAGAGAGGGAATTACAAGGTGCTCAAATGAGTTTAGAAGACAAAAGTCTTAAAGATATGCTCTTAAGTAGATTTGGCAGCCACATTGGAACCTTGAAGTTGGAGTTTTCAAAGAAGAAGAAGAAAGGAAAACTACCTAAAGAAGGAAGGAAAGTACTGCACGAGTGGTGGAATGTTCACTATAAATGGCCATATCCTACGGAAGCTGATAAAATTGCGCTGGCAGAGACAACGGGACTAGATCCCAAGCAAATTAACAATTGGTTTATTAACCAACGTAAGCGGCACTGGAAGCCTTCTGAAAGCATGCAATTGGCAACTGTGGACAATCTGCCTGAACAATTTTGCGGTAGTCTCGACTCTTGA 1026 47.56 MLRLAISPIPVPSFLLPSFLEMEENIDMFAIRSTADYSAKSFLSPDNLLDYHSFLSSTSFRDRIPIFGSHELPSAASAVSEAEAPSITPAFPLQPDVLSVIKAKAKIVSHPTYPRLLHAYIDCQKVGAPPEIAGLLEEIRRENKQHAISTCFGADPELDEFMETYCEMLVKYKSDLSTPFYEASSFLNNIELQLSSLCAGASARSPSNEDAMSSDDELNWGERELQGAQMSLEDKSLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLHEWWNVHYKWPYPTEADKIALAETTGLDPKQINNWFINQRKRHWKPSESMQLATVDNLPEQFCGSLDS 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 217516 230217 + MC08g0033 Mch8g0036 693657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0036 341 Pfam ELK domain 237 257 IPR005539 GO:0003677(InterPro)
Mch8g0036 341 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 117 327 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Mch8g0036 341 SMART KNOX1_2 101 145 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Mch8g0036 341 SMART ELK_2 236 257 IPR005539 GO:0003677(InterPro)
Mch8g0036 341 Gene3D - 255 327 - -
Mch8g0036 341 SMART KNOX2_2 148 199 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Mch8g0036 341 CDD homeodomain 270 320 IPR001356 GO:0003677(InterPro)
Mch8g0036 341 SUPERFAMILY Homeodomain-like 257 327 IPR009057 -
Mch8g0036 341 Pfam KNOX2 domain 152 198 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Mch8g0036 341 ProSiteProfiles 'Homeobox' domain profile. 256 319 IPR001356 GO:0003677(InterPro)
Mch8g0036 341 SMART HOX_1 258 323 IPR001356 GO:0003677(InterPro)
Mch8g0036 341 ProSitePatterns 'Homeobox' domain signature. 294 317 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Mch8g0036 341 Pfam KNOX1 domain 104 143 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Mch8g0036 341 Pfam Homeobox KN domain 276 315 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g0036 Mch-Chr8:217516 Mch8g2772 Mch-Chr8:30795674 1.01E-74 dispersed
Mch6g0144 Mch-Chr6:909398 Mch8g0036 Mch-Chr8:217516 8.19E-101 wgd
Mch8g0036 Mch-Chr8:217516 Mch9g2260 Mch-Chr9:22932845 8.59E-143 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43748 PF03791 KNOX2 1.20E-22 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0036 - - - 0.0