Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0055 AAGAAGAAGATGAGTGGATTGCAATCCAACGCCTCGGCCTCCTGTTGTTGGCTGAAGCGGAAAAGGCCTCCCAAGATTGAGATCCCTACCGTGTTGCAGGAGATTGAGATTCAGCCCCACAAACTTGAACTCGCCACTCCCCCAACCGATACTGTATCCTCCGCTGGGAATGCTAAATTTTTCTCTGCAGATTTTGCAGATCATGTGGGGGTTTTCTCCGTCAAGGGCAAGAAGAGGTTCATGGAAGATACTCACAAGATCATTCCTTGCTTGGAAGGCCACTTGAATGATGCTTTTTTTGGCGTTTATGATGGCCATGGGGGCAGGAAGGCGGCGAATTTTGTTGCACAAAATTTGCACAATAACATACTTGATGTGGTGGGCAATTGTACAAGATCTGCAGAGAAGGAGGAAGCAATTAAAGCCGCTTTCTTGAAAACAGACCGAGACTTCTTGGATCTGGGTTTAGGCAGTGGTGTCTGCTGTGTCACAGTTCTGATACAAGGAGAAGAAGTTATTGTTTCCAACTTGGGAGATTGCAGGGCTGTTCTTTCTAGAGGTGGAGTAGCTGAAGCAATAACAAAAGATCATAGAGTAGAACACGAGGATGAACGAAAAAGAATAGAAAACAAGGGTGGATATGTTGAGATTCATAAGGGGGCATGGAGAGTTCATGGGATTCTATCTGTTTCTAGAAGCATTGGAGATGCTCATTTGAAGGACTGGGTGTTGGCAGAGCCTGATTCAAAGGTCCTACTTCTAAGTGAAGACATGGAGTTTCTTGTTCTAGCTACTGATGGGCTATGGGAAAAGGTTGGAAACCAAGAGACTGTTGATGTTGTGACACGACTGAGGTTGATGGATAAAAACTTTGGACTATCAAAAGGTTTCGTGAGAAGCATGAGCCGTGCTCATTGCTCTGTGAATACAAGTCCATCAAAACTCCGGAGAGTTTCATTAGTCGTGCAACAGAAAGGGGTGGGCAAATCTCCAATCTGTGAGAAATCAATTGACGGCTGTGAAGAAGGTGAATATGACTATTCTTGTGAAATTGAAAGTCCAGGATCCAAATCAAGAAGAATATCATTGGTCAGACATATGAAGATGAAGACGGAATCTTCACCTAAGGAGAATAATGGTTGCTACAGAAAGAGACCCACTTCCAGTAGACTTGTGGCTGCTTGTAAGGAGCTTGTAGATCTAGCTCTGAGTAGGGGTAGCCTCGATGACATTACAGTAATGATTATCGATTTAAGTCACTTTAGATGCAAGACCATGCATGATTCAATTGGAATTCCTGCTTGCTTCTCATTTGGGGAGAGGCCAAGTAATGATCCAGCTTCAGTAATCAGGTCAGGGCAGAGTGTGTTTATGTCAGTGTACCAGACAAAGATCGTTGGTCAGTGTCGCCTCATCACAATCACTTGGTGTAAGAATCTGCTACTTCACGGTCTTTCCATCTGTGTTCAAGGACCCGAAGGAAGCGAGCAATATCAGTGTAAGGTCGAGATGAAGCCATGGTACTTCTGGAGGAAACAAGGCTCCAAGCATTTTGAAGTGGATGGGCGAGCTGTTGATGTGGTTTGGGACCTCAAGAGTGCAAAATTCAATGGGGAGACAGAGCCACAGTCAGATTACTATGTTGCCGTCGTCTGTGAAGAGGAAGTTGTTTTACTTATTGGGGATCTCAAGAAAGATGCCTTCAGAAAGACAGGTTGTCGGCCAGCTTTGATTGAGCCGACGCTGGTTTCAAAGAAGGAACACGTATTTGGGAAGAAAATGTTCTCCACCAGAATCCAATTCCATGAGAAAGGCAAGCTCCACACCATCTCAATCGAGTTCATCAACGTCCACACAAATCCCAGTTTTTCTGATTCGTTCGATCCAGAGCTGGAGATGAGGATCGACGGGCAACCAGCAATCAAGATCAAGCACCTTCACTGGAAGTTCAGAGGCAACGAATCTGTACTAATCAGCAGAACAAGATTAGAAGTTTACTGGGATGTCCATGATTGGCTATTTGGGTCAGGTCCAAGGTACGGGCTTTTCATATTCAGGCCAATGTGTTCATGGTCTGAATCTCCATCATCATCACTTGCATCAGCATCGCCAACTCCTCCAGTTCCAGCCTCTTTAACATCAACAGGAATGTCCTTGAGAGAAGTGATTGCTACATCAGGGGATGTTGAGAGCGGTGGTGGGGCGTCCAAATTTTGCTTATTTCTTTATGCTTGGAAGATGGAA 2244 44.92 KKKMSGLQSNASASCCWLKRKRPPKIEIPTVLQEIEIQPHKLELATPPTDTVSSAGNAKFFSADFADHVGVFSVKGKKRFMEDTHKIIPCLEGHLNDAFFGVYDGHGGRKAANFVAQNLHNNILDVVGNCTRSAEKEEAIKAAFLKTDRDFLDLGLGSGVCCVTVLIQGEEVIVSNLGDCRAVLSRGGVAEAITKDHRVEHEDERKRIENKGGYVEIHKGAWRVHGILSVSRSIGDAHLKDWVLAEPDSKVLLLSEDMEFLVLATDGLWEKVGNQETVDVVTRLRLMDKNFGLSKGFVRSMSRAHCSVNTSPSKLRRVSLVVQQKGVGKSPICEKSIDGCEEGEYDYSCEIESPGSKSRRISLVRHMKMKTESSPKENNGCYRKRPTSSRLVAACKELVDLALSRGSLDDITVMIIDLSHFRCKTMHDSIGIPACFSFGERPSNDPASVIRSGQSVFMSVYQTKIVGQCRLITITWCKNLLLHGLSICVQGPEGSEQYQCKVEMKPWYFWRKQGSKHFEVDGRAVDVVWDLKSAKFNGETEPQSDYYVAVVCEEEVVLLIGDLKKDAFRKTGCRPALIEPTLVSKKEHVFGKKMFSTRIQFHEKGKLHTISIEFINVHTNPSFSDSFDPELEMRIDGQPAIKIKHLHWKFRGNESVLISRTRLEVYWDVHDWLFGSGPRYGLFIFRPMCSWSESPSSSLASASPTPPVPASLTSTGMSLREVIATSGDVESGGGASKFCLFLYAWKME 748
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 319282 324523 + MC08g0049 Mch8g0055 693676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0055 748 Pfam Protein phosphatase 2C 68 285 IPR001932 -
Mch8g0055 748 SUPERFAMILY PP2C-like 67 419 IPR036457 -
Mch8g0055 748 Gene3D - 56 425 IPR036457 -
Mch8g0055 748 SMART PP2C_4 58 416 IPR001932 -
Mch8g0055 748 CDD PP2Cc 68 418 IPR001932 -
Mch8g0055 748 ProSitePatterns PPM-type phosphatase domain signature. 99 107 IPR000222 GO:0043169(InterPro)
Mch8g0055 748 ProSiteProfiles PPM-type phosphatase domain profile. 68 418 IPR001932 -
Mch8g0055 748 PANTHER EXPRESSED PROTEIN 432 746 IPR008586 -
Mch8g0055 748 Pfam Plant protein of unknown function (DUF868) 452 746 IPR008586 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g0953 Mch-Chr3:13396518 Mch8g0055 Mch-Chr8:319282 2.70E-75 dispersed
Mch6g0403 Mch-Chr6:2658264 Mch8g0055 Mch-Chr8:319282 1.55E-24 dispersed
Mch6g0853 Mch-Chr6:5919257 Mch8g0055 Mch-Chr8:319282 1.24E-29 dispersed
Mch8g0055 Mch-Chr8:319282 Mch9g1452 Mch-Chr9:16876043 6.57E-69 dispersed
Mch8g0055 Mch-Chr8:319282 Mch9g0871 Mch-Chr9:6707334 8.84E-54 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0055 - - - 0.0