Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0067 ATGGAAATTAATCCCATCTTCGTCCTTCTGATAATCTTTGCCACTCTTCTTCTCCAAATGAGCTCCATTTCATCCTCTCCCGTGGCCGACCCCGAGACGATCGTTGAAGAAGTTCTCACGAGCATCAACAATGCGAGTAGAAGGAAGTTGGGGTTTCTGTCGTGTGGAACCGGGAACCCAATCGACGACTGCTGGCGGTGCGACCCCAACTGGGAGAAGAACCGGAAGCGGCTCGCGGACTGCGGCATTGGGTTCGGAAAGCGAGCCATTGGCGGCAAAGACGGAAAGTTTTACGTGGTGACTGACCCAAGCGACAAAGACGTGGTGAACCCGAAGCCGGGGACTCTACGCCACGCCGTGATCCAAAAGGAGCCGCTGTGGATAACCTTCAAGCGGGACATGGTGATAAAACTGAAGGCGGAGCTGTTGATGAACTCGTTCAAGACCATCGACGGGCGTGGGGCGTCGGTGCACATCGCGGGTGGGCCCTGCATAACCATACAATTCGTGACCAACATAATAATCCACGGCATCAACATCCACGACTGCAAGCAGGGGGGGAACACGTACGTCCGCGATTCGCCGGACCACTACGGCTGGAGAACTCTATCGGACGGCGACGGGGTTTCCATTTTTGGCGGCACCCATATTTGGATCGACCATTGTTCTCTGTCCAACTGCCGCGATGGGCTGATCGATGCCATTCATGGGTCCACTGCCATCACCATTTCTAACAATTACATGACCCACCACAACAAGGTCATGCTTTTGGGCCATAGCGATTCCTACACTCAAGACAAGAATATGCAAGTTACTATAGCTTTTAACCATTTTGGTGAAGGACTCGTACAGAGAATGCCCAGATGCCGACATGGGTATTTTCATGTGGTCAATAATGACTATACCCATTGGATAATGTACGCCATTGGTGGCAGTGCATCTCCCACCATCAACAGCCAAGGGAACCGTTACCTTGCTCCCAATGACCAAAACAACAAAGAGGTGACGAAGCATGAGGATGCACCGCAGAGCCAATGGAAGAATTGGAATTGGAGATCGAGTGGAGATTTAATGTTGAATGGTGCGTTCTTCACGATGTCGGGTGCTGGAGCATCGTCAAGCTACGCCAGGGCGTCGAGCTTGAGTGCGAAGTCGTCGTCTCTGGTGGGCTCCATGACGGCCACGGCCGGGGTGCTGAGATGTAGAAAAGGCTCTCGGTGCTAG 1224 52.86 MEINPIFVLLIIFATLLLQMSSISSSPVADPETIVEEVLTSINNASRRKLGFLSCGTGNPIDDCWRCDPNWEKNRKRLADCGIGFGKRAIGGKDGKFYVVTDPSDKDVVNPKPGTLRHAVIQKEPLWITFKRDMVIKLKAELLMNSFKTIDGRGASVHIAGGPCITIQFVTNIIIHGINIHDCKQGGNTYVRDSPDHYGWRTLSDGDGVSIFGGTHIWIDHCSLSNCRDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPNDQNNKEVTKHEDAPQSQWKNWNWRSSGDLMLNGAFFTMSGAGASSSYARASSLSAKSSSLVGSMTATAGVLRCRKGSRC 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 378620 380585 - MC08g0060 Mch8g0067 693688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0067 407 SMART amb_all 133 330 IPR002022 -
Mch8g0067 407 SUPERFAMILY Pectin lyase-like 42 401 IPR011050 -
Mch8g0067 407 Gene3D - 58 400 IPR012334 -
Mch8g0067 407 Pfam Pectate lyase 145 322 IPR002022 -
Mch8g0067 407 PRINTS Pollen allergen Amb family signature 349 373 IPR018082 -
Mch8g0067 407 PRINTS Pollen allergen Amb family signature 378 401 IPR018082 -
Mch8g0067 407 PRINTS Pollen allergen Amb family signature 141 157 IPR018082 -
Mch8g0067 407 PRINTS Pollen allergen Amb family signature 81 98 IPR018082 -
Mch8g0067 407 PRINTS Pollen allergen Amb family signature 105 130 IPR018082 -
Mch8g0067 407 PRINTS Pollen allergen Amb family signature 285 304 IPR018082 -
Mch8g0067 407 PRINTS Pollen allergen Amb family signature 205 226 IPR018082 -
Mch8g0067 407 PRINTS Pollen allergen Amb family signature 307 326 IPR018082 -
Mch8g0067 407 PANTHER PECTATE LYASE 18-RELATED 17 404 IPR045032 GO:0030570(InterPro)
Mch8g0067 407 FunFam Pectate lyase 58 400 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g2173 Mch-Chr4:23547285 Mch8g0067 Mch-Chr8:378620 3.85E-224 dispersed
Mch5g0169 Mch-Chr5:1075846 Mch8g0067 Mch-Chr8:378620 3.20E-209 dispersed
Mch6g2290 Mch-Chr6:24906742 Mch8g0067 Mch-Chr8:378620 6.13E-206 dispersed
Mch7g0880 Mch-Chr7:13370018 Mch8g0067 Mch-Chr8:378620 5.48E-208 dispersed
Mch8g0067 Mch-Chr8:378620 Mch9g1816 Mch-Chr9:19952755 1.32E-175 dispersed
Mch3g1395 Mch-Chr3:16452225 Mch8g0067 Mch-Chr8:378620 2.13E-231 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0067 K01728 - csv:101208076 728.783