Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch8g0100 | ATGGATATTATTGACGTTGAAGAAAATCTATTTGCTGCGAGTGATGCTAAGCTACATGGAGGAATGTGCAAGACTCTTTCTGCATTATATTGTAAAGTACTATCAATTTTCCCTTCATTGGAAGCTGCACGACCTCGGAGCAAATCTGGTATTCAGGCATTATGTTCATTGCATGTAGCACTTGAAAAAGCCAAGAATATTCTTCAACATTGTTCAGAGAGCAGCAAACTTTACTTGGCTATAACTGGGGACTCTGTCCTGTCAAAATTTGAGAAGGTAAAATGTGCTCTAAAAGATAGTCTTAAACGTGTTGAAGATATTGTTCCTCAGTCAATTGGCTACCAGATCCAGGAGATTATGAAGGAACTGGAGAGTACGCAATTTTTCCTAGATCCTATGGAGAAGCAAGTTGGTGATGATATTATTCAATTACTCCAACAGGGACGAACATTCAGCAATACTGTTGACACCAATGAGCTTGAGTCTTTTCACCAAGCTGCTATTAGACTTGGAATAAACTCCTCAAGAGCAGCTCTTGCAGAGAGAAGAGCACTAAAGAAACTAATAGACCGGTCTCGCACTGAAGATGACAAGAGGAAGGAGTCAATTGTAGCATATCTTTTTCATCTCATGAGGAAGTACTCCAAGTTATTTAGAAGCGAGATACCAGAGGACAATGATTCACCGGGTTCTGGACCTTGTTCACCCACTGTTCAGAGCTCTCTCGAGGACAGTGGACCTGGTGAAAATGGTCAAGCCTTTGAAAGGCAGCTGACAAAGGTTGGTTCCTTTACTTTCAAACCAAAAAATCGCAGATTGGAGCAGATTCCCCTTCCGCCTGATGAGTTGAGGTGTCCTATATCACTGCAGCTAATGTATGATCCAGTCATAATTGCTTCCGGGCAAACATATGAAAGGCTTTGCATTGAGAAGTGGTTAAGTGATGGCCATAACACCTGCCCAAAAACTCAACAGAAACTCTCTCATCTTTCGTTGACACCTAATTACTGTGTTAAGGGTCTGATTGCTAACTGGTGTGATCAGCATGGCGTTCCTGTTCCTGATGGGCCCCCAGATAGTCTTGACCTCAATTACTGGAGGCTTGTGTTATCTGAATCAGAGTCTCTAAATTTGCCATCTATGGACACTGTTGGTTCTTGCAAGTTGAAAGATGTTAAAGTCGTTCCATTAGAAGAAAATGGTACAACTGAGGAGATTGAAGAAAATGAAGTGGTGGATGATAACTCTGCTGAAGAACCAGAGCCTGATATAAATATGCTTACTAGATACGAACAATATTTGAAACTTTTGAATGAAGAAGTTGGCTTGAGAAGAAAGTCAACTGTGGTGGAGCAAATAAGGCTGTTACTGAAGGATGATGAAGAGGCGAGAATTTTTATGGGAGCTAATGGATTTGTCCAGGGACTTCTACATTACTTAGAGACAGCTGTGAAAGAACAAAATGCCAAGGCTCAGGAAAGTGGAGCAATGGCTCTTTTCAACCTTGCTGTCAACAACGATAGGAACAAGGAATTGATGCTGGCAGAAGGAATGATTTCATTGTTGGAGGAAATGATTATGAACCCAAATTCCCATGGATATGCAACCGCCCTCTATCTCAACGTTTCCTGCCTGGAGGAAGCGAAAACTATTATCGGCTCGAGTTGTGCGGTCCCATTCTTGACACAACTTCTCCATGCTAATACCGAAACACTGTGCAAGCTTGATGCCCTTCACACTCTCTACAATCTGTCGACCGTGCCCTCTAACATTCCCAACCTGCTTTCTTCTGGAATCATCAGGGGTCTTCAATCTGTTCTTGCAGCCCCTCGTGATCGAACATGGACTGAAAAGTGCATAGCGATCTTGATAAATTTGGCTTCAAGTGAATCTGGTAGCGATCAAATGTCATCTACTCCAGAACTTATCAGTGCGTTGGCAACAATATTAGACAATGGTGAACCCATTGAGCAGGAACAAGCAGTGTCATGTCTCTTGATTCTGTGCAATGGGAATGAGAAGTGCAGCGAGATGGTCCTACAGGAAGGCGTAATTCCCGGGTTGGTGTCGATGTCTGTGAACGGCACAGCAAGAGGCAAGGAGAAGGCTCAAAAGCTACTGATGTTGTTCAGGGAGCAACGACAACGGGAGCCACCAACACCGACCCCGACATTGACAGACCAGCCGGAGAGTAGCGGGACATCAATGCCTGGGGCAGAATCAAAGCCACTGTGCAAGTCAATTTCAAGAAGGAAAACGGGAAAAGCTTTTAGCTTTTTATGGAAAAGCAAAAGCTATTCAGTGTACCAATGCTGA | 2316 | 43.31 | MDIIDVEENLFAASDAKLHGGMCKTLSALYCKVLSIFPSLEAARPRSKSGIQALCSLHVALEKAKNILQHCSESSKLYLAITGDSVLSKFEKVKCALKDSLKRVEDIVPQSIGYQIQEIMKELESTQFFLDPMEKQVGDDIIQLLQQGRTFSNTVDTNELESFHQAAIRLGINSSRAALAERRALKKLIDRSRTEDDKRKESIVAYLFHLMRKYSKLFRSEIPEDNDSPGSGPCSPTVQSSLEDSGPGENGQAFERQLTKVGSFTFKPKNRRLEQIPLPPDELRCPISLQLMYDPVIIASGQTYERLCIEKWLSDGHNTCPKTQQKLSHLSLTPNYCVKGLIANWCDQHGVPVPDGPPDSLDLNYWRLVLSESESLNLPSMDTVGSCKLKDVKVVPLEENGTTEEIEENEVVDDNSAEEPEPDINMLTRYEQYLKLLNEEVGLRRKSTVVEQIRLLLKDDEEARIFMGANGFVQGLLHYLETAVKEQNAKAQESGAMALFNLAVNNDRNKELMLAEGMISLLEEMIMNPNSHGYATALYLNVSCLEEAKTIIGSSCAVPFLTQLLHANTETLCKLDALHTLYNLSTVPSNIPNLLSSGIIRGLQSVLAAPRDRTWTEKCIAILINLASSESGSDQMSSTPELISALATILDNGEPIEQEQAVSCLLILCNGNEKCSEMVLQEGVIPGLVSMSVNGTARGKEKAQKLLMLFREQRQREPPTPTPTLTDQPESSGTSMPGAESKPLCKSISRRKTGKAFSFLWKSKSYSVYQC | 771 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 579458 | 584026 | - | MC08g0092 | Mch8g0100 | 693721 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch8g0100 | 771 | ProSiteProfiles | U-box domain profile. | 278 | 352 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Mch8g0100 | 771 | SUPERFAMILY | RING/U-box | 279 | 355 | - | - | |
| Mch8g0100 | 771 | Gene3D | - | 10 | 105 | IPR036537 | GO:0007166(InterPro) | |
| Mch8g0100 | 771 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 278 | 352 | IPR013083 | - | |
| Mch8g0100 | 771 | MobiDBLite | consensus disorder prediction | 712 | 751 | - | - | |
| Mch8g0100 | 771 | MobiDBLite | consensus disorder prediction | 221 | 252 | - | - | |
| Mch8g0100 | 771 | PANTHER | U BOX DOMAIN-CONTAINING | 22 | 714 | - | - | |
| Mch8g0100 | 771 | MobiDBLite | consensus disorder prediction | 230 | 247 | - | - | |
| Mch8g0100 | 771 | SUPERFAMILY | ARM repeat | 434 | 708 | IPR016024 | - | |
| Mch8g0100 | 771 | Pfam | U-box domain | 280 | 349 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Mch8g0100 | 771 | CDD | RING-Ubox_PUB | 280 | 332 | IPR045210 | - | |
| Mch8g0100 | 771 | MobiDBLite | consensus disorder prediction | 717 | 738 | - | - | |
| Mch8g0100 | 771 | FunFam | RING-type E3 ubiquitin transferase | 278 | 352 | - | - | |
| Mch8g0100 | 771 | Gene3D | - | 405 | 717 | IPR011989 | - | |
| Mch8g0100 | 771 | SMART | Ubox_2 | 282 | 345 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch8g0100 | Mch-Chr8:579458 | Mch9g1301 | Mch-Chr9:15216303 | 1.14E-23 | dispersed | |
| Mch10g0789 | Mch-Chr10:5496246 | Mch8g0100 | Mch-Chr8:579458 | 1.37E-88 | transposed | |
| Mch2g0459 | Mch-Chr2:3345025 | Mch8g0100 | Mch-Chr8:579458 | 4.12E-20 | transposed | |
| Mch4g1693 | Mch-Chr4:20083835 | Mch8g0100 | Mch-Chr8:579458 | 4.11E-12 | transposed | |
| Mch8g0100 | Mch-Chr8:579458 | Mch9g2354 | Mch-Chr9:23503244 | 5.48E-268 | wgd |
Pathway information