Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0111 ATGGCCGAAGAAGAGTCCGGGGAGGCTATCCGTCCCGAAATTCCGACCGGACGAGTCAAGAAGATAATGAAGGTGGACAAGGACGTATGCAAAGTGAACTCTGAAGCACTATTTCTTGTCTCATGCGCCACCGATCTCTTCCTGAAGCTTCTCGCTGAAAAGTCTGCAGAAGTCGCCACGGAGAAGAAACGGAAGACAGTTAAGCTTGAACACATCCGAATCGCCGTCAAAAGGCATCGACCGATCAGTGATTTTCTCCTCGATTCGCTACCTCTTCCACCTCAGCCGTCGGATGCTCCGGCGAAGAACGAGAATCGCACCCGCACTGCCGCCGACAAAGCAGCTCCCGAGGGAACCCGTCGAATCGACGATTTCTTTCGCAAGCCAGCGAAGACAACGTCGGATGAGAACAACGAGTCG 420 53.57 MAEEESGEAIRPEIPTGRVKKIMKVDKDVCKVNSEALFLVSCATDLFLKLLAEKSAEVATEKKRKTVKLEHIRIAVKRHRPISDFLLDSLPLPPQPSDAPAKNENRTRTAADKAAPEGTRRIDDFFRKPAKTTSDENNES 140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 644916 645335 - MC08g0103 Mch8g0111 693732

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0111 140 MobiDBLite consensus disorder prediction 105 140 - -
Mch8g0111 140 MobiDBLite consensus disorder prediction 87 140 - -
Mch8g0111 140 SUPERFAMILY Histone-fold 13 79 IPR009072 GO:0046982(InterPro)
Mch8g0111 140 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 11 112 IPR050568 GO:0000976(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
Mch8g0111 140 Gene3D Histone, subunit A 1 91 IPR009072 GO:0046982(InterPro)
Mch8g0111 140 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 13 76 IPR003958 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0111 - - - - 0.0
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch6g0056 . 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.5 8.3e-89 323.6
Mch4g0926 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.1 6.2e-52 201.1
Mch4g0926 . 28 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 69.9 4.1e-48 188.3
Mch6g0056 . 34 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.0 6.8e-43 171.0
Mch4g0926 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.6 4.7e-54 208.0
Mch6g0056 . 34 193 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 1.7e-51 199.5
Mch6g0056 . 34 192 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.7 3.4e-38 155.2
Mch6g0056 . 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 81.4 6.8e-81 297.4
Mch4g0926 . 82 233 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.9 1.1e-49 193.7
Mch4g0926 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.7 1.6e-64 242.7
Mch6g0056 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 3.8e-50 194.9
Mch9g1703 . 1 277 CCAAT-HAP5 Transcription Factor Family AT3G12480 51.6 4.7e-57 218.4
Mch8g0111 . 3 134 CCAAT-HAP5 Transcription Factor Family AT5G43250 63.2 3.2e-37 151.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009175 3 1 1 1 0 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 0 1 1 1 1 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43752 PF00808 CBFD_NFYB_HMF 7.10E-18 CL0012 Mch TF