Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0149 ATGGGAAGAGGGAGAGTGGAGCTGAAGAAGATAGAGAACAAAATAAATCGACAGGTTACGTTCACCAAGAGGAGAAATGGGCTTCTTAAAAAGGCCTACGAGCTCTCAATTCTCTGCGATGCCGAAGTTGCCCTCATCATCTTCTCCACTCGCGGCAAACTCTACGAATTCTCCAGCTCCTCAAGTATAGCCAAGACTTTGGAGAGGTATCAAAGGCACAGCTATGGCGCATTGGAACCCTCCCACCATCCCAAGGACACTCAGAGATGGTACCAGGAGTATTTGAAGCTCAAAGCAGAAGTGGAATCCCTCCAGCATTCTCAGAGGCGATTTCTTGGGGAGGAATTAGATGATCTGGAGACCAAGGAACTTGACCAACTTGAGATCCAATTAGAAATGTCTCTGAAGCAAATCAGGTCCGCAAAGAGTCAAACGATGTTTGATCAGTTATCTGATCTTCAAAAAAAGGAAGAGTTGCTGCTGGAAACAAATCAAGCTTTGAGGAGGAAGTTGGAGGAAAGTAATGCAGCTCTTCATTGGACATGGGAAGCTTCAGATCAGCACAGTTTGCAATACAGCCGACAAGCTGAGGGCTTTCTTCAACGCAATAACATTGTTGCATTGGAAAATAGTTACCATCCTGCAGAAGTTTCAAATCAAGAAAATGGCATAAACTCTGGGCCAGAACCAGAAGCTGCTAGTGGGTTTCCTTCACACTGGATGATGCTTTGA 732 45.22 MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSTRGKLYEFSSSSSIAKTLERYQRHSYGALEPSHHPKDTQRWYQEYLKLKAEVESLQHSQRRFLGEELDDLETKELDQLEIQLEMSLKQIRSAKSQTMFDQLSDLQKKEELLLETNQALRRKLEESNAALHWTWEASDQHSLQYSRQAEGFLQRNNIVALENSYHPAEVSNQENGINSGPEPEAASGFPSHWMML 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 929268 934030 + MC08g0137 Mch8g0149 693770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0149 243 Coils Coil 150 177 - -
Mch8g0149 243 MobiDBLite consensus disorder prediction 217 243 - -
Mch8g0149 243 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch8g0149 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g0149 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g0149 243 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g0149 243 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Mch8g0149 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g0149 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g0149 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g0149 243 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g0149 243 Pfam K-box region 85 172 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch8g0149 243 Gene3D - 13 82 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g0149 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g0149 243 Coils Coil 124 144 - -
Mch8g0149 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 193 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Mch8g0149 243 FunFam MADS-box transcription factor 1 13 86 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1976 Mch-Chr1:19399983 Mch8g0149 Mch-Chr8:929268 1.56E-45 dispersed
Mch3g1043 Mch-Chr3:14054124 Mch8g0149 Mch-Chr8:929268 3.51E-43 dispersed
Mch8g0149 Mch-Chr8:929268 Mch8g2368 Mch-Chr8:26794936 2.36E-79 dispersed
Mch8g0149 Mch-Chr8:929268 Mch8g0150 Mch-Chr8:937525 8.98E-50 tandem
Mch3g1677 Mch-Chr3:18407785 Mch8g0149 Mch-Chr8:929268 6.46E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43753 PF01486 K-box 4.30E-27 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0149 K09264 - csv:101220998 372.859