Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0150 ATGGGAAGGGGTAGGGTTCAGTTGAAGAGAATTGAGAACAAAATAAACAGGCAAGTAACTTTCTCGAAAAGGAAAGCTGGGCTGCTGAAGAAGGCTCATGAGATCTCTGTTCTGTGTGATGCTGAAGTTGCTCTCATTCTCTTCTCCCACAAAGGAAAGCTCTTTGAATACGCCACTGATTCCAGCATGGAGAAAATACTTGAACGGTATGAGAGATATTCTTATGTGGGAAGGCAGCAAATTGCACTTTCTGAAACTGAATTTTCTCAGGAAAACTGGACGCTGGAATATTACAGACTCAAGTCCAAGGTCGAGCTATTACAAAGAAACAACAGTCATTATATGGGAGAAGATTTGGACTCGTTGAGTGTCAAAGAACTGCAGAATCTGGAGCAACAGATTGACACTGCTCTTAAACACATTCGTTCAAGAAAAAACCAACTTATGTATGATTCCATCTCTGCACTTCAGAGAAAGGCAAGCAAACGCTCTATTAATTCCTCTCTCTTTTTTTTTTATAAATTTATAAATCTGTGCATTTTACTTACAATTTTTTTTTTTTTGAAACAAAAGATAAAGGAGAAGGAGAAGAGTGTAGCAATGGCTCAGCAGGCAGAATGGGAGCATCAGCAACAGCAGCACCATGGTTACAGTGCTTTGTCATTCTTATTCCCAACACCTCCTCATCCCTCTCTAAACATTGGG 705 39.86 MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALILFSHKGKLFEYATDSSMEKILERYERYSYVGRQQIALSETEFSQENWTLEYYRLKSKVELLQRNNSHYMGEDLDSLSVKELQNLEQQIDTALKHIRSRKNQLMYDSISALQRKASKRSINSSLFFFYKFINLCILLTIFFFLKQKIKEKEKSVAMAQQAEWEHQQQQHHGYSALSFLFPTPPHPSLNIG 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 937525 942758 + MC08g0138 Mch8g0150 693771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0150 235 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Mch8g0150 235 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g0150 235 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g0150 235 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g0150 235 ProSiteProfiles K-box domain profile. 90 198 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch8g0150 235 Coils Coil 127 147 - -
Mch8g0150 235 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g0150 235 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Mch8g0150 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g0150 235 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g0150 235 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g0150 235 Pfam K-box region 87 161 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch8g0150 235 Gene3D - 13 84 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g0150 235 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 200 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Mch8g0150 235 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g0150 Mch-Chr8:937525 Mch8g2369 Mch-Chr8:26813819 1.00E-65 dispersed
Mch8g0149 Mch-Chr8:929268 Mch8g0150 Mch-Chr8:937525 8.98E-50 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43754 PF01486 K-box 3.20E-25 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0150 K09264 - csv:101219414 343.584