Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0160 ATGAGAACGGGGAAAAGCAATCTGGAGGACGAAGAGTACGAGGAGGACGAGTTGGTTGCTAAAAGAGAGGGGCCTTCTTCTACTTCCAATGCTAACAATAGCATCGGAAACAGCAAAGATGCGAAGAACAACGACAAGGCTAGCGCCATACGGTCAAAGCACTCTGTTACGGAGCAGCGCAGACGAAGCAAGATAAATGAGAGATTCCAGATTTTGAGAGAGCTTATACCTCACAGCGATCAAAAGAGAGACACTGCATCATTCTTGTTGGAGGTGATTGAGTATGTCCAGTTTTTACAGGAAAAGGTGCAGAAGTACGAGGGTTCATATCAGAATTGGAGCGGGGAACCCACTAAGTTAATACCATGGAGAAACAGTCACTGGCGCATGCAGACTTTTGTTGGCCATCCCCAGTCTGGTAAAAATGGTTCTGCTTCAGGACCAACGTATCCAGGGAAGTTTGATGACAACAACATTTCAATTTCACCCGCCATGCTTGCAAGCTCACAAAATCCCCTCGATTCCCACACAGGCAGAGATATTATGCAGGACGCTGACATAATAAATAAAGGAGTTTCTCATCCCATGTCTCTAGAAGGAAATATGCATACTTCTATGCGTAGTGACAGTGTTCTTGATCAATCTCTTCACATTCCAATTTGTGATGCACAGACAACAGAGTGTCCTATCCCCAACAATGCATCAAGCCAACCGGAGGAGATAGATATTGAAGGGGGGACAATAAGCGTTTCAAGTCTTTATTCAGAAGGGTTATTGAACAGCTTGACTCAAGCTCTGCAGAATACTGGACTGGATTTGTCACAGGCTAGCATCTCCGTTCAGGTTGATCTGGGCAAGAGAGCAAATAAAGGGATAGCATTTGGAGCGCCTATCTTTAAGGAAACTGGGAATCCTCCTTCTGGCCACCCAGCAATGGCACATATAGGGGACCTGGGCAGTGGAGACGACTCGGATCAAGCTAAAAAGCGGCTTAGGACATGA 1002 45.91 MRTGKSNLEDEEYEEDELVAKREGPSSTSNANNSIGNSKDAKNNDKASAIRSKHSVTEQRRRSKINERFQILRELIPHSDQKRDTASFLLEVIEYVQFLQEKVQKYEGSYQNWSGEPTKLIPWRNSHWRMQTFVGHPQSGKNGSASGPTYPGKFDDNNISISPAMLASSQNPLDSHTGRDIMQDADIINKGVSHPMSLEGNMHTSMRSDSVLDQSLHIPICDAQTTECPIPNNASSQPEEIDIEGGTISVSSLYSEGLLNSLTQALQNTGLDLSQASISVQVDLGKRANKGIAFGAPIFKETGNPPSGHPAMAHIGDLGSGDDSDQAKKRLRT 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1008880 1014298 - MC08g0146 Mch8g0160 693781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0160 333 SMART finulus 55 105 IPR011598 GO:0046983(InterPro)
Mch8g0160 333 MobiDBLite consensus disorder prediction 300 333 - -
Mch8g0160 333 FunFam BHLH domain class transcription factor 47 119 - -
Mch8g0160 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 49 99 IPR011598 GO:0046983(InterPro)
Mch8g0160 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 119 IPR036638 GO:0046983(InterPro)
Mch8g0160 333 CDD bHLH_AtBIM_like 48 124 - -
Mch8g0160 333 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 6 333 IPR044295 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0046983(InterPro)
Mch8g0160 333 MobiDBLite consensus disorder prediction 44 62 - -
Mch8g0160 333 Coils Coil 96 116 - -
Mch8g0160 333 Gene3D - 47 119 IPR036638 GO:0046983(InterPro)
Mch8g0160 333 Pfam Helix-loop-helix DNA-binding domain 51 100 IPR011598 GO:0046983(InterPro)
Mch8g0160 333 MobiDBLite consensus disorder prediction 23 43 - -
Mch8g0160 333 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0319 Mch-Chr6:2122823 Mch8g0160 Mch-Chr8:1008880 2.53E-59 dispersed
Mch8g0160 Mch-Chr8:1008880 Mch8g2375 Mch-Chr8:26867901 5.24E-61 dispersed
Mch3g1670 Mch-Chr3:18377399 Mch8g0160 Mch-Chr8:1008880 6.34E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43755 PF00010 HLH 6.10E-13 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0160 - - - 0.0