Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch8g0160 | ATGAGAACGGGGAAAAGCAATCTGGAGGACGAAGAGTACGAGGAGGACGAGTTGGTTGCTAAAAGAGAGGGGCCTTCTTCTACTTCCAATGCTAACAATAGCATCGGAAACAGCAAAGATGCGAAGAACAACGACAAGGCTAGCGCCATACGGTCAAAGCACTCTGTTACGGAGCAGCGCAGACGAAGCAAGATAAATGAGAGATTCCAGATTTTGAGAGAGCTTATACCTCACAGCGATCAAAAGAGAGACACTGCATCATTCTTGTTGGAGGTGATTGAGTATGTCCAGTTTTTACAGGAAAAGGTGCAGAAGTACGAGGGTTCATATCAGAATTGGAGCGGGGAACCCACTAAGTTAATACCATGGAGAAACAGTCACTGGCGCATGCAGACTTTTGTTGGCCATCCCCAGTCTGGTAAAAATGGTTCTGCTTCAGGACCAACGTATCCAGGGAAGTTTGATGACAACAACATTTCAATTTCACCCGCCATGCTTGCAAGCTCACAAAATCCCCTCGATTCCCACACAGGCAGAGATATTATGCAGGACGCTGACATAATAAATAAAGGAGTTTCTCATCCCATGTCTCTAGAAGGAAATATGCATACTTCTATGCGTAGTGACAGTGTTCTTGATCAATCTCTTCACATTCCAATTTGTGATGCACAGACAACAGAGTGTCCTATCCCCAACAATGCATCAAGCCAACCGGAGGAGATAGATATTGAAGGGGGGACAATAAGCGTTTCAAGTCTTTATTCAGAAGGGTTATTGAACAGCTTGACTCAAGCTCTGCAGAATACTGGACTGGATTTGTCACAGGCTAGCATCTCCGTTCAGGTTGATCTGGGCAAGAGAGCAAATAAAGGGATAGCATTTGGAGCGCCTATCTTTAAGGAAACTGGGAATCCTCCTTCTGGCCACCCAGCAATGGCACATATAGGGGACCTGGGCAGTGGAGACGACTCGGATCAAGCTAAAAAGCGGCTTAGGACATGA | 1002 | 45.91 | MRTGKSNLEDEEYEEDELVAKREGPSSTSNANNSIGNSKDAKNNDKASAIRSKHSVTEQRRRSKINERFQILRELIPHSDQKRDTASFLLEVIEYVQFLQEKVQKYEGSYQNWSGEPTKLIPWRNSHWRMQTFVGHPQSGKNGSASGPTYPGKFDDNNISISPAMLASSQNPLDSHTGRDIMQDADIINKGVSHPMSLEGNMHTSMRSDSVLDQSLHIPICDAQTTECPIPNNASSQPEEIDIEGGTISVSSLYSEGLLNSLTQALQNTGLDLSQASISVQVDLGKRANKGIAFGAPIFKETGNPPSGHPAMAHIGDLGSGDDSDQAKKRLRT | 333 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 1008880 | 1014298 | - | MC08g0146 | Mch8g0160 | 693781 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch8g0160 | 333 | SMART | finulus | 55 | 105 | IPR011598 | GO:0046983(InterPro) | |
Mch8g0160 | 333 | MobiDBLite | consensus disorder prediction | 300 | 333 | - | - | |
Mch8g0160 | 333 | FunFam | BHLH domain class transcription factor | 47 | 119 | - | - | |
Mch8g0160 | 333 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 49 | 99 | IPR011598 | GO:0046983(InterPro) | |
Mch8g0160 | 333 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 47 | 119 | IPR036638 | GO:0046983(InterPro) | |
Mch8g0160 | 333 | CDD | bHLH_AtBIM_like | 48 | 124 | - | - | |
Mch8g0160 | 333 | PANTHER | BES1-INTERACTING MYC-LIKE PROTEIN | 6 | 333 | IPR044295 | GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0046983(InterPro) | |
Mch8g0160 | 333 | MobiDBLite | consensus disorder prediction | 44 | 62 | - | - | |
Mch8g0160 | 333 | Coils | Coil | 96 | 116 | - | - | |
Mch8g0160 | 333 | Gene3D | - | 47 | 119 | IPR036638 | GO:0046983(InterPro) | |
Mch8g0160 | 333 | Pfam | Helix-loop-helix DNA-binding domain | 51 | 100 | IPR011598 | GO:0046983(InterPro) | |
Mch8g0160 | 333 | MobiDBLite | consensus disorder prediction | 23 | 43 | - | - | |
Mch8g0160 | 333 | MobiDBLite | consensus disorder prediction | 1 | 62 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch6g0319 | Mch-Chr6:2122823 | Mch8g0160 | Mch-Chr8:1008880 | 2.53E-59 | dispersed | |
Mch8g0160 | Mch-Chr8:1008880 | Mch8g2375 | Mch-Chr8:26867901 | 5.24E-61 | dispersed | |
Mch3g1670 | Mch-Chr3:18377399 | Mch8g0160 | Mch-Chr8:1008880 | 6.34E-53 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43755 | PF00010 | HLH | 6.10E-13 | No_clan | Mch | TF |
Pathway information
