Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0168 CCTCCCGCCTCCGCCTCCGCCGCCGGCGTCGGCCTCGGCTACGGCATCGCCATCGCTGTCAGCATCCTCGTCTTCATCTCCACCATCATGCTCGTCTCCTACGCCTGCATTCGAGTCAAATCCAACCGCCCCCGCACCGCCGCCGCCGCCCCTCCCCCTCCCCCTCCCTCCGCCGACAATGTCGTCGTCCTCATGCTCGGATTAGATGGATCGATCATCGAATCGTACCCTAAATTGGTGCTCGGAGAGAGCCGCCGCCTCCCCGCGCCCAACCACGGCACCTGCTCGATTTGCTTGTCCGATTACCAGCCCAAGGATAGCCTCCGCTGCATTCCGGAGTGCCGTCACTGTTTCCATGCGGATTGCATCGACGAATGGCTGCGTATGAGCGCGACTTGTCCGTTATGTAGAAATTCCCCTGCTCCTACGCCTGTTGCTACTCCTCTCTCCGAGTTCGCTCCTCTGGCT 468 62.18 PPASASAAGVGLGYGIAIAVSILVFISTIMLVSYACIRVKSNRPRTAAAAPPPPPPSADNVVVLMLGLDGSIIESYPKLVLGESRRLPAPNHGTCSICLSDYQPKDSLRCIPECRHCFHADCIDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLA 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1082346 1082813 + MC08g0154 Mch8g0168 693789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0168 156 PANTHER RING-H2 FINGER PROTEIN ATL67 7 47 IPR044289 GO:0016567(InterPro)|GO:0016740(InterPro)
Mch8g0168 156 SMART ring_2 95 136 IPR001841 -
Mch8g0168 156 Pfam Ring finger domain 94 137 IPR001841 -
Mch8g0168 156 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
Mch8g0168 156 SUPERFAMILY RING/U-box 94 141 - -
Mch8g0168 156 CDD RING-H2_EL5-like 95 137 - -
Mch8g0168 156 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 142 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0887 Mch-Chr10:6267128 Mch8g0168 Mch-Chr8:1082346 3.03E-35 dispersed
Mch10g1222 Mch-Chr10:9793283 Mch8g0168 Mch-Chr8:1082346 1.12E-24 dispersed
Mch1g0982 Mch-Chr1:12934982 Mch8g0168 Mch-Chr8:1082346 2.75E-30 dispersed
Mch5g1335 Mch-Chr5:14304949 Mch8g0168 Mch-Chr8:1082346 2.31E-10 dispersed
Mch5g1527 Mch-Chr5:16258227 Mch8g0168 Mch-Chr8:1082346 1.49E-30 dispersed
Mch8g0168 Mch-Chr8:1082346 Mch9g1446 Mch-Chr9:16852177 2.82E-13 dispersed
Mch8g0168 Mch-Chr8:1082346 Mch5g0473 Mch-Chr5:3192583 2.90E-37 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0168 - - - 0.0