Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0171 ATGTTTAATGAAGAGGCTTCCATGGCTGATGCCAGTCCCAGGACTGATATCTCAACTGATGGGGACACAGATGAAAAGAACCAGCGGTCTGATAGAGGCCAAGCTCTTATTATGGCTTCTGATTCGAGTGACAGATCAAAGGATAAAACTGACCAAAAGACTCTTCGCAGACTAGCACAAAATCGTGAGGCTGCTAGGAAAAGCCGATTGAGGAAAAAAGCATATGTTCAACAACTAGAGAGCAGTCGTTTAAAGTTGACACAACTAGAGCAAGAGCTTCAGCGTGCTCGACAGCAGGGAATTTTCATATCAAGCTCAGGTGACCAGACGCATTCAATGAGTGGAAATGGGGCCATGGCATTTGATGCGGAATATGCTCGATGGCTTGAAGATAAAAACCGTCAAATCAACGAACTGAGATCAGCTGTTAATTCTCATGCAAGTGACCCCGAACTGCGTATTATCGTTGATGGCATCTTGGTTCACTATGATGAGCTTTTCAGGTTCAAGGGCAATGCGGCAAAGGCTGATGTTTTCCATTTATTATCAGGCATGTGGAAAACACCTGCAGAAAGATGTTTTCTCTGGCTCGGGGGTTTTCGTTCATCCGAGCTCCTAAAGCTTCTTGTAAGTCAATTAGAGCCTCTAACAGAGCAGCAATTGGTGGGAATCACAAACTTGCAGCAATCATCACAGCAGGCAGAAGATGCATTATCACAAGGGATGGAGGCATTGCAACAGTCCCTGGCAGAGACGTTATTGAGCGGATCTCTCGGTTCCTCGGGTTCATCGGGGAATGTTGCAAACTACATGGGTCAAATGGCCATGGCCATGGGTAAACTCGGGACCCTCGAAGGTTTTATACGCCAAGCCGACAATCTGCGACAACAGACGCTCCAACAAATGCATCGAATATTGACAACTCGTCAGTCTGCTCGTGCGCTCCTCGCCATACACGACTACTTCTCCCGGCTACGAGCTCTTAGTTCGCTCTGGCTTGCTCGTCCAAGAGAGTAA 1017 47.1 MFNEEASMADASPRTDISTDGDTDEKNQRSDRGQALIMASDSSDRSKDKTDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQTHSMSGNGAMAFDAEYARWLEDKNRQINELRSAVNSHASDPELRIIVDGILVHYDELFRFKGNAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVSQLEPLTEQQLVGITNLQQSSQQAEDALSQGMEALQQSLAETLLSGSLGSSGSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRE 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1092042 1098812 - MC08g0157 Mch8g0171 693792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0171 338 SMART brlzneu 49 112 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0171 338 SUPERFAMILY Leucine zipper domain 53 96 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0171 338 PANTHER TRANSCRIPTION FACTOR TGA9 26 338 - -
Mch8g0171 338 ProSiteProfiles DOG1 domain profile. 118 335 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Mch8g0171 338 FunFam BZIP family transcription factor 52 101 - -
Mch8g0171 338 Pfam Seed dormancy control 135 211 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Mch8g0171 338 MobiDBLite consensus disorder prediction 17 31 - -
Mch8g0171 338 Coils Coil 129 149 - -
Mch8g0171 338 Gene3D - 52 104 - -
Mch8g0171 338 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 56 71 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0171 338 MobiDBLite consensus disorder prediction 1 55 - -
Mch8g0171 338 Pfam bZIP transcription factor 53 93 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0171 338 Coils Coil 72 99 - -
Mch8g0171 338 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 51 95 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0253 Mch-Chr2:1875375 Mch8g0171 Mch-Chr8:1092042 1.52E-109 dispersed
Mch4g2646 Mch-Chr4:26572233 Mch8g0171 Mch-Chr8:1092042 5.62E-96 dispersed
Mch5g1417 Mch-Chr5:15275651 Mch8g0171 Mch-Chr8:1092042 1.30E-112 dispersed
Mch8g0171 Mch-Chr8:1092042 Mch9g1723 Mch-Chr9:19194764 2.01E-180 dispersed
Mch8g0171 Mch-Chr8:1092042 Mch3g0661 Mch-Chr3:11100891 7.14E-106 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43756 PF14144 DOG1 2.30E-31 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0171 K14431 - csv:101213210 573.548