Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch8g0200 | ATGGCTACTCTAATGGATTTCTATGGTTGCAGAGGTTCTCAGTCAGATCTGCTTGGTGGTGAATTAATGGAAGCGCTTGAGCCTTTTATGAAAGCTGCTTCCTCTCCCACTTGTTCTTCTTCTTCTTCCTTCACTCCTGATTTTTCTTCTTCTTCTCCTTATTCTTCTTCCTACACCAATTTCTCATTCTCTTCTCCAATCCAGACGGAGTCCACTTCATATCCTTCCGATTGCTCCTTTCCGCCGATGACCCATTTGTTTTCCGGCGGGTTTTCGGCCCAAAACCTCCACGGGATGGACCAATCGTGCTCGATCGGGCTCAATTACTTGACCCCATTTCAGATCCAACAGATCCAGACTCAGATCGGTCTCCAAACCCAAATCCAGCCGAATTGGGGACAGATCGACCACCAAGAAGTTTCCAAGAACCTGAGGAACGGCGTTAATTTGCTCGGGCCGAAGGCGGTTCCGATGAAGCAAATTGGTTCTCCGGCGAAACCGACGAAGCTTTATCGAGGGGTGAGGCAGAGGCACTGGGGAAAATGGGTGGCTGAGATTCGTCTTCCGAGGAACCGCACTCGGCTCTGGCTCGGCACCTTCGACACCGCCGAAGAAGCCGCTCTCGCCTACGACAAAGCCGCTTACAAGCTCCGCGGCGACTTCGCACGGCTCAATTTCCCTCACCTGAAGCACCAGGGCTCCTCCGTCGGCGGCGAGTTCGGCGAGTACAAGCCGCTCCACTCCGCCGTCGACGCCAAGCTCGAAGCCATCTGCCAAAGCTTGGCCGAGTCGCACAAACAGGGGAAATCGGAGAGGGCCGCGTCGTCGTCGGCGAGGAAGTCGAAATCGGGTTCTTCTACAGTCGGATCGGAGTCTCAGACTCCGACGGTGATAGATCCCGAGGACGATCTGAAGGCGGCGGCGGCGGCGGAAGAAGTTAGATCGAGCGGATCGGAGATCTGTTGTAAGGTGGAGAACTCGTCGTCGTCGCCGGTTTCGACTGAGAGCGACGAATCGGCAGGGTCTTCGCCATTATCGGATCTGACGTTCCCCGATTCAGCGGATTCGCCGTGGGAACAACCTTCGGAAAGCTGTATGTTGCAGAAATATCCGTCTGAAATTGATTGGGCTTCGATTTTCACGTCT | 1146 | 54.36 | MATLMDFYGCRGSQSDLLGGELMEALEPFMKAASSPTCSSSSSFTPDFSSSSPYSSSYTNFSFSSPIQTESTSYPSDCSFPPMTHLFSGGFSAQNLHGMDQSCSIGLNYLTPFQIQQIQTQIGLQTQIQPNWGQIDHQEVSKNLRNGVNLLGPKAVPMKQIGSPAKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPHLKHQGSSVGGEFGEYKPLHSAVDAKLEAICQSLAESHKQGKSERAASSSARKSKSGSSTVGSESQTPTVIDPEDDLKAAAAAEEVRSSGSEICCKVENSSSSPVSTESDESAGSSPLSDLTFPDSADSPWEQPSESCMLQKYPSEIDWASIFTS | 382 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 1320538 | 1321683 | + | MC08g0183 | Mch8g0200 | 693821 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch8g0200 | 382 | PRINTS | Ethylene responsive element binding protein signature | 193 | 209 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch8g0200 | 382 | PRINTS | Ethylene responsive element binding protein signature | 171 | 182 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch8g0200 | 382 | SMART | rav1_2 | 170 | 233 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch8g0200 | 382 | CDD | AP2 | 169 | 229 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch8g0200 | 382 | SUPERFAMILY | DNA-binding domain | 170 | 228 | IPR016177 | GO:0003677(InterPro) | |
Mch8g0200 | 382 | MobiDBLite | consensus disorder prediction | 316 | 366 | - | - | |
Mch8g0200 | 382 | MobiDBLite | consensus disorder prediction | 263 | 301 | - | - | |
Mch8g0200 | 382 | MobiDBLite | consensus disorder prediction | 320 | 366 | - | - | |
Mch8g0200 | 382 | Gene3D | AP2/ERF domain | 170 | 228 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch8g0200 | 382 | FunFam | Ethylene-responsive transcription factor 2 | 169 | 228 | - | - | |
Mch8g0200 | 382 | Pfam | AP2 domain | 170 | 219 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch8g0200 | 382 | ProSiteProfiles | AP2/ERF domain profile. | 170 | 227 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch8g0200 | 382 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 | 16 | 379 | IPR051758 | GO:0005634(PANTHER)|GO:0043565(PANTHER) | |
Mch8g0200 | 382 | MobiDBLite | consensus disorder prediction | 277 | 297 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch2g0567 | Mch-Chr2:3959297 | Mch8g0200 | Mch-Chr8:1320538 | 3.09E-30 | dispersed | |
Mch4g0163 | Mch-Chr4:1107202 | Mch8g0200 | Mch-Chr8:1320538 | 1.01E-29 | dispersed | |
Mch5g1399 | Mch-Chr5:14977407 | Mch8g0200 | Mch-Chr8:1320538 | 1.32E-21 | dispersed | |
Mch6g1948 | Mch-Chr6:21921317 | Mch8g0200 | Mch-Chr8:1320538 | 2.41E-33 | dispersed | |
Mch8g0200 | Mch-Chr8:1320538 | Mch8g0488 | Mch-Chr8:3428700 | 1.78E-21 | dispersed | |
Mch11g0797 | Mch-Chr11:5371170 | Mch8g0200 | Mch-Chr8:1320538 | 4.65E-105 | transposed | |
Mch7g0865 | Mch-Chr7:13193316 | Mch8g0200 | Mch-Chr8:1320538 | 8.08E-34 | transposed | |
Mch1g1431 | Mch-Chr1:16064319 | Mch8g0200 | Mch-Chr8:1320538 | 3.03E-85 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43759 | PF00847 | AP2 | 5.20E-15 | CL0081 | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch8g0200 | K09286 | - | csv:101222833 | 493.426 |