Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0200 ATGGCTACTCTAATGGATTTCTATGGTTGCAGAGGTTCTCAGTCAGATCTGCTTGGTGGTGAATTAATGGAAGCGCTTGAGCCTTTTATGAAAGCTGCTTCCTCTCCCACTTGTTCTTCTTCTTCTTCCTTCACTCCTGATTTTTCTTCTTCTTCTCCTTATTCTTCTTCCTACACCAATTTCTCATTCTCTTCTCCAATCCAGACGGAGTCCACTTCATATCCTTCCGATTGCTCCTTTCCGCCGATGACCCATTTGTTTTCCGGCGGGTTTTCGGCCCAAAACCTCCACGGGATGGACCAATCGTGCTCGATCGGGCTCAATTACTTGACCCCATTTCAGATCCAACAGATCCAGACTCAGATCGGTCTCCAAACCCAAATCCAGCCGAATTGGGGACAGATCGACCACCAAGAAGTTTCCAAGAACCTGAGGAACGGCGTTAATTTGCTCGGGCCGAAGGCGGTTCCGATGAAGCAAATTGGTTCTCCGGCGAAACCGACGAAGCTTTATCGAGGGGTGAGGCAGAGGCACTGGGGAAAATGGGTGGCTGAGATTCGTCTTCCGAGGAACCGCACTCGGCTCTGGCTCGGCACCTTCGACACCGCCGAAGAAGCCGCTCTCGCCTACGACAAAGCCGCTTACAAGCTCCGCGGCGACTTCGCACGGCTCAATTTCCCTCACCTGAAGCACCAGGGCTCCTCCGTCGGCGGCGAGTTCGGCGAGTACAAGCCGCTCCACTCCGCCGTCGACGCCAAGCTCGAAGCCATCTGCCAAAGCTTGGCCGAGTCGCACAAACAGGGGAAATCGGAGAGGGCCGCGTCGTCGTCGGCGAGGAAGTCGAAATCGGGTTCTTCTACAGTCGGATCGGAGTCTCAGACTCCGACGGTGATAGATCCCGAGGACGATCTGAAGGCGGCGGCGGCGGCGGAAGAAGTTAGATCGAGCGGATCGGAGATCTGTTGTAAGGTGGAGAACTCGTCGTCGTCGCCGGTTTCGACTGAGAGCGACGAATCGGCAGGGTCTTCGCCATTATCGGATCTGACGTTCCCCGATTCAGCGGATTCGCCGTGGGAACAACCTTCGGAAAGCTGTATGTTGCAGAAATATCCGTCTGAAATTGATTGGGCTTCGATTTTCACGTCT 1146 54.36 MATLMDFYGCRGSQSDLLGGELMEALEPFMKAASSPTCSSSSSFTPDFSSSSPYSSSYTNFSFSSPIQTESTSYPSDCSFPPMTHLFSGGFSAQNLHGMDQSCSIGLNYLTPFQIQQIQTQIGLQTQIQPNWGQIDHQEVSKNLRNGVNLLGPKAVPMKQIGSPAKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPHLKHQGSSVGGEFGEYKPLHSAVDAKLEAICQSLAESHKQGKSERAASSSARKSKSGSSTVGSESQTPTVIDPEDDLKAAAAAEEVRSSGSEICCKVENSSSSPVSTESDESAGSSPLSDLTFPDSADSPWEQPSESCMLQKYPSEIDWASIFTS 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1320538 1321683 + MC08g0183 Mch8g0200 693821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0200 382 PRINTS Ethylene responsive element binding protein signature 193 209 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0200 382 PRINTS Ethylene responsive element binding protein signature 171 182 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0200 382 SMART rav1_2 170 233 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0200 382 CDD AP2 169 229 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0200 382 SUPERFAMILY DNA-binding domain 170 228 IPR016177 GO:0003677(InterPro)
Mch8g0200 382 MobiDBLite consensus disorder prediction 316 366 - -
Mch8g0200 382 MobiDBLite consensus disorder prediction 263 301 - -
Mch8g0200 382 MobiDBLite consensus disorder prediction 320 366 - -
Mch8g0200 382 Gene3D AP2/ERF domain 170 228 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0200 382 FunFam Ethylene-responsive transcription factor 2 169 228 - -
Mch8g0200 382 Pfam AP2 domain 170 219 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0200 382 ProSiteProfiles AP2/ERF domain profile. 170 227 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0200 382 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 16 379 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
Mch8g0200 382 MobiDBLite consensus disorder prediction 277 297 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0567 Mch-Chr2:3959297 Mch8g0200 Mch-Chr8:1320538 3.09E-30 dispersed
Mch4g0163 Mch-Chr4:1107202 Mch8g0200 Mch-Chr8:1320538 1.01E-29 dispersed
Mch5g1399 Mch-Chr5:14977407 Mch8g0200 Mch-Chr8:1320538 1.32E-21 dispersed
Mch6g1948 Mch-Chr6:21921317 Mch8g0200 Mch-Chr8:1320538 2.41E-33 dispersed
Mch8g0200 Mch-Chr8:1320538 Mch8g0488 Mch-Chr8:3428700 1.78E-21 dispersed
Mch11g0797 Mch-Chr11:5371170 Mch8g0200 Mch-Chr8:1320538 4.65E-105 transposed
Mch7g0865 Mch-Chr7:13193316 Mch8g0200 Mch-Chr8:1320538 8.08E-34 transposed
Mch1g1431 Mch-Chr1:16064319 Mch8g0200 Mch-Chr8:1320538 3.03E-85 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43759 PF00847 AP2 5.20E-15 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0200 K09286 - csv:101222833 493.426