Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0250 ATGGAATTCGAGGAGGAGCACGAAGACCAAGACGACGAAATAATGGAGGACACAACGCCCATCTCCCACCACTCTCTCACCTACGACTCCACCCCGTCGCCGGCCAGAAAGCCCCCCTCCGCCGCCGGAACAAATTTCCGGTACAGAGAGTGCCTGAAGAATCACGCCATCGGAATAGGCGGCCACGCCGTCGACGGCTGCGGCGAGTTCATGCCCGCCGGAGAGGACGGCTCCATAGACGCACTCAAATGCGCCGCCTGTAACTGCCACCGGAATTTCCACCGGAAGGAGACCGACTCAGATCAGGGCGTTGGCGTTGGCGGTGGAGTTGGCGTTGGCGGTCAGTCCTACTACTACCACCATCCGCATCCACATCAGCAGCTGTCGTCATCCTACCGCGGGCCCCCGCCGTCCTACGTGTACCTGGCGGGGGCCCCATTCCAGCAGAGGCCGCTGGCGCTGCCGGCGGCGTCGGGGGGCGGGGAGGAGGACGCGTCGAATCCGAGCAGCAGCGGCGGCGGGGGAGGCGGCGGCGGCGGCGGAGGAGGGAGCAAGAAGAGATTCAGGACGAAATTCAGCGCGGAGCAGAAGGAGAAGATGTTAGGGTTTGCGGAGAGAGTTGGTTGGACGATTCAGAAACACGACGAGGCTGACGTGGAGCGGTTCTGCAGAGAGACCGGCGTGCGGCGGCAGGTCCTCAAGGTGTGGATGCACAATAACAAGCACACTCTCGGCACCAAACCCTAA 747 63.05 MEFEEEHEDQDDEIMEDTTPISHHSLTYDSTPSPARKPPSAAGTNFRYRECLKNHAIGIGGHAVDGCGEFMPAGEDGSIDALKCAACNCHRNFHRKETDSDQGVGVGGGVGVGGQSYYYHHPHPHQQLSSSYRGPPPSYVYLAGAPFQQRPLALPAASGGGEEDASNPSSSGGGGGGGGGGGGSKKRFRTKFSAEQKEKMLGFAERVGWTIQKHDEADVERFCRETGVRRQVLKVWMHNNKHTLGTKP 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1661113 1663282 - MC08g0229 Mch8g0250 693871

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0250 248 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 47 97 IPR006456 -
Mch8g0250 248 MobiDBLite consensus disorder prediction 20 38 - -
Mch8g0250 248 MobiDBLite consensus disorder prediction 1 15 - -
Mch8g0250 248 MobiDBLite consensus disorder prediction 152 187 - -
Mch8g0250 248 NCBIfam homeobox domain, ZF-HD class 185 241 IPR006455 -
Mch8g0250 248 SUPERFAMILY Homeodomain-like 171 244 IPR009057 -
Mch8g0250 248 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 48 97 IPR006456 -
Mch8g0250 248 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 33 243 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Mch8g0250 248 MobiDBLite consensus disorder prediction 1 43 - -
Mch8g0250 248 Gene3D - 170 246 - -
Mch8g0250 248 FunFam Zinc-finger homeodomain protein 2 179 246 - -
Mch8g0250 248 Pfam ZF-HD protein dimerisation region 46 98 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0250 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0649 Mch-Chr10:4470006 Mch8g0250 Mch-Chr8:1661113 1.10E-50 dispersed
Mch1g1506 Mch-Chr1:16506922 Mch8g0250 Mch-Chr8:1661113 1.87E-43 dispersed
Mch3g1742 Mch-Chr3:18828988 Mch8g0250 Mch-Chr8:1661113 3.59E-22 dispersed
Mch4g2303 Mch-Chr4:24466624 Mch8g0250 Mch-Chr8:1661113 1.04E-20 dispersed
Mch8g0250 Mch-Chr8:1661113 Mch8g0775 Mch-Chr8:5475107 1.40E-50 dispersed
Mch1g1388 Mch-Chr1:15767323 Mch8g0250 Mch-Chr8:1661113 8.03E-61 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch1g1388 . 46 228 ZF-HD Transcription Factor Family AT5G65410 54.7 1.4e-47 186.8
Mch8g0250 . 44 248 ZF-HD Transcription Factor Family AT5G65410 54.6 8.2e-43 171.0
Mch1g1388 . 1 224 ZF-HD Transcription Factor Family AT4G24660 50.4 4.5e-55 211.5
Mch10g0649 . 1 141 ZF-HD Transcription Factor Family AT4G24660 55.7 6.2e-44 174.5
Mch8g0250 . 47 247 ZF-HD Transcription Factor Family AT2G02540 51.5 5.7e-37 151.8
Mch1g1506 . 107 328 ZF-HD Transcription Factor Family AT2G18350 50.4 1.6e-51 199.9
Mch4g2304 . 6 257 ZF-HD Transcription Factor Family AT5G15210 55.7 3.2e-52 202.2
Mch8g1659 . 24 301 ZF-HD Transcription Factor Family AT5G15210 51.1 3.8e-45 178.7
Mch4g2304 . 16 259 ZF-HD Transcription Factor Family AT3G28920 58.2 1.0e-57 220.7
Mch8g1659 . 23 288 ZF-HD Transcription Factor Family AT3G28920 57.9 8.3e-52 201.1
Mch4g2304 . 1 263 ZF-HD Transcription Factor Family AT5G39760 51.6 9.8e-51 197.6
Mch8g1659 . 31 274 ZF-HD Transcription Factor Family AT5G39760 61.9 3.6e-45 179.1
Mch4g2304 . 64 260 ZF-HD Transcription Factor Family AT1G69600 51.5 4.3e-48 188.3
Mch9g2134 . 21 207 ZF-HD Transcription Factor Family AT1G69600 52.3 3.1e-46 182.2
Mch8g0250 . 47 247 ZF-HD Transcription Factor Family AT2G02540 51.5 5.7e-37 151.8
Mch1g1388 . 1 224 ZF-HD Transcription Factor Family AT4G24660 50.4 4.5e-55 211.5
Mch10g0649 . 1 141 ZF-HD Transcription Factor Family AT4G24660 55.7 6.2e-44 174.5
Mch4g2304 . 1 263 ZF-HD Transcription Factor Family AT5G39760 51.6 9.8e-51 197.6
Mch8g1659 . 31 274 ZF-HD Transcription Factor Family AT5G39760 61.9 3.6e-45 179.1
Mch1g1506 . 107 328 ZF-HD Transcription Factor Family AT2G18350 50.4 1.6e-51 199.9
Mch1g1388 . 46 228 ZF-HD Transcription Factor Family AT5G65410 54.7 1.4e-47 186.8
Mch8g0250 . 44 248 ZF-HD Transcription Factor Family AT5G65410 54.6 8.2e-43 171.0
Mch4g2304 . 64 260 ZF-HD Transcription Factor Family AT1G69600 51.5 4.3e-48 188.3
Mch9g2134 . 21 207 ZF-HD Transcription Factor Family AT1G69600 52.3 3.1e-46 182.2
Mch4g2304 . 6 257 ZF-HD Transcription Factor Family AT5G15210 55.7 3.2e-52 202.2
Mch8g1659 . 24 301 ZF-HD Transcription Factor Family AT5G15210 51.1 3.8e-45 178.7
Mch4g2304 . 16 259 ZF-HD Transcription Factor Family AT3G28920 58.2 1.0e-57 220.7
Mch8g1659 . 23 288 ZF-HD Transcription Factor Family AT3G28920 57.9 8.3e-52 201.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000801 3 3 3 2 2 3 5 3 3 2 2 3 5 2 2 3 3 5 5 3 2 2 3 3 3 3 3 4 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43762 PF04770 ZF-HD_dimer 8.80E-30 No_clan Mch TF