Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0250 ATGGAATTCGAGGAGGAGCACGAAGACCAAGACGACGAAATAATGGAGGACACAACGCCCATCTCCCACCACTCTCTCACCTACGACTCCACCCCGTCGCCGGCCAGAAAGCCCCCCTCCGCCGCCGGAACAAATTTCCGGTACAGAGAGTGCCTGAAGAATCACGCCATCGGAATAGGCGGCCACGCCGTCGACGGCTGCGGCGAGTTCATGCCCGCCGGAGAGGACGGCTCCATAGACGCACTCAAATGCGCCGCCTGTAACTGCCACCGGAATTTCCACCGGAAGGAGACCGACTCAGATCAGGGCGTTGGCGTTGGCGGTGGAGTTGGCGTTGGCGGTCAGTCCTACTACTACCACCATCCGCATCCACATCAGCAGCTGTCGTCATCCTACCGCGGGCCCCCGCCGTCCTACGTGTACCTGGCGGGGGCCCCATTCCAGCAGAGGCCGCTGGCGCTGCCGGCGGCGTCGGGGGGCGGGGAGGAGGACGCGTCGAATCCGAGCAGCAGCGGCGGCGGGGGAGGCGGCGGCGGCGGCGGAGGAGGGAGCAAGAAGAGATTCAGGACGAAATTCAGCGCGGAGCAGAAGGAGAAGATGTTAGGGTTTGCGGAGAGAGTTGGTTGGACGATTCAGAAACACGACGAGGCTGACGTGGAGCGGTTCTGCAGAGAGACCGGCGTGCGGCGGCAGGTCCTCAAGGTGTGGATGCACAATAACAAGCACACTCTCGGCACCAAACCCTAA 747 63.05 MEFEEEHEDQDDEIMEDTTPISHHSLTYDSTPSPARKPPSAAGTNFRYRECLKNHAIGIGGHAVDGCGEFMPAGEDGSIDALKCAACNCHRNFHRKETDSDQGVGVGGGVGVGGQSYYYHHPHPHQQLSSSYRGPPPSYVYLAGAPFQQRPLALPAASGGGEEDASNPSSSGGGGGGGGGGGGSKKRFRTKFSAEQKEKMLGFAERVGWTIQKHDEADVERFCRETGVRRQVLKVWMHNNKHTLGTKP 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1661113 1663282 - MC08g0229 Mch8g0250 693871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0250 248 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 47 97 IPR006456 -
Mch8g0250 248 MobiDBLite consensus disorder prediction 20 38 - -
Mch8g0250 248 MobiDBLite consensus disorder prediction 1 15 - -
Mch8g0250 248 MobiDBLite consensus disorder prediction 152 187 - -
Mch8g0250 248 NCBIfam homeobox domain, ZF-HD class 185 241 IPR006455 -
Mch8g0250 248 SUPERFAMILY Homeodomain-like 171 244 IPR009057 -
Mch8g0250 248 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 48 97 IPR006456 -
Mch8g0250 248 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 33 243 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Mch8g0250 248 MobiDBLite consensus disorder prediction 1 43 - -
Mch8g0250 248 Gene3D - 170 246 - -
Mch8g0250 248 FunFam Zinc-finger homeodomain protein 2 179 246 - -
Mch8g0250 248 Pfam ZF-HD protein dimerisation region 46 98 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0649 Mch-Chr10:4470006 Mch8g0250 Mch-Chr8:1661113 1.10E-50 dispersed
Mch1g1506 Mch-Chr1:16506922 Mch8g0250 Mch-Chr8:1661113 1.87E-43 dispersed
Mch3g1742 Mch-Chr3:18828988 Mch8g0250 Mch-Chr8:1661113 3.59E-22 dispersed
Mch4g2303 Mch-Chr4:24466624 Mch8g0250 Mch-Chr8:1661113 1.04E-20 dispersed
Mch8g0250 Mch-Chr8:1661113 Mch8g0775 Mch-Chr8:5475107 1.40E-50 dispersed
Mch1g1388 Mch-Chr1:15767323 Mch8g0250 Mch-Chr8:1661113 8.03E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43762 PF04770 ZF-HD_dimer 8.80E-30 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0250 - - - 0.0