Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0257 ATGGGGAAAAACTGCAGAAGGACTTGGTTCGAGAAACAGGACATTTGTTCTGTGAGAAGGATTGGCTTTTCTGCTCAACAAGTCAGAACAGTAATTAAGTCTAAGGCCGTCGACATGCCGCCTCTGGGTGTGCAACTATACGTCACAGAACGTCAGGTGGTGATGGATAATGGCATAGTTCAAGTCACGTTTTCAAACCCAGATGGCATAGTGATCGGAATCCGATACAATGGAGTCGACAACTTGCTCGAAATTCTCAACGACGAATATAACAGAGGGTATTGGGACCTCGTGTGGAGCCCATCCGCCTCCACAACTGGATCGTTCGATGTGATAAAGGCTACGAGTTTTGAGGTTATAGTGGAAAATGAAGACCAAGTGGAGCTCTCCTTTACACGAAAATGGGATCTGTCTCTCGAGGGAAAGCTTGTGCCTTTAGAGATTGATAAAAGGTTTGTAATGCTTCGGGGTTCGTCAGGGTTCTACTCTTATGCTATTTACCAACACTTGAAAGAATGGCCTGGTTTCAACCTTGGTGAAACCAGACTCGCCTTCAAACTCAGAAAAGACAAGTTCCACTATATGGCCATGGCAGACAACAGACAGAGATCCATGCCGCTGCCAGATGACCGGTCTCCGCCAAGAGGCCGAGCCCTGGCCTATCCGGAGGCTGTCCTGCTCGTCGACCCCGTCGAACCTGAGCTCCAGGGAGAGGTGGATGACAAGTATCAATATTCATGTGACAACAAAGATAGCAGCGTCCATGGATGGATATCCACTGACCCGCCGGTCGGGTTCTGGCTAATCACCCCCAGCAACGAGTTCCGGTCCGGCGGACCCGTTAAGCAGAACCTGACTTCTCACGTCGGCCCAACCACCCTTGCTGTTTTTATTAGCGCCCATTACACGGGAGAGGATCTGGTCCCTAAAATCGGAGCGGGCGAGGCGTGGAAGAAAGTTTTTGGTCCTGTGTTCATCTATCTCAACTCAACTTACGATTCCAGCGACGCAATTCAGCTCTGGGAAGATGCCAAAGCACAGGAGACGATCGAAGTCCAAAGTTGGCCCTACAGCTTCCCTGCTTCGGATGATTTTCCAAAGTCAAACCAGCGTGGTAATATCGGTGGTAGACTCTTAGTCAAGGATAGGTACGTCAGCGAAGACTTCATACCAGCAAACGGTGCGTTTGTTGGCTTAGCGCCACCAGGAGACGTAGGATCGTGGCAAAGAGAGAGTAAGGGCTACCAATTTTGGAGTAGAGCAGATGAAAGTGGATACTTTTCTATCAACGGCGTAAGAACTGGCGACTACAATCTTTATGCATGGGTCCCCGGTTTCATTGGAGATTATCGAAATGATTCTCTCATCAACATTTCAGAAGGTAGTGAGATAGACGTGGGTGACATAATATACGAAGCTCCGAGAGAAGGGGCTACAATGTGGGAAATAGGAATCCCCGATCGCTCAGCAGCAGAGTTCTATGTTCCAGATCCAAATCCTGGCTACGTCAATAAGCTCTATCTTAACCATCCTGATAAGTTTCGGCAGTATGGTCTGTGGGAAAGATACACAGAATTGTACCCCGACGCAGACTTGGTATATACAATTGGCGTTAGTGATTACACTAAGGATTGGTTCTTCGCACAGGTCACCAGGAAGACAGAAAACGGAACATTCAAGGGGACAACGTGGCAAGTGAAGTTCAAGCTGGACAATGTGGACAGAAAAGGAACTTACAAGCTTCGGATCGCTTTGGCTTCCGCTTCTCTGGCGGAATTGCAGGTTGCCGTAAATGACCCAAAATCAAAGCCAGCGTTCTCGAGTGGGCTGATCGGAAGGGACAATTCGATCGCCAGACACGGAATTCACGGCCTGCATTGGCTCTACAACGTGGATATTCCGGCCAATCGCCTCGTCGCCGGCGACAACGTCATCTTTTTCACGCAACCAAGGAGCACCAGCCCTTTCCAAGCTATTATGTACGATTATATTCGTCTGGAATCTCCTCCACCTCCCTCCTCCGCCCATGCTTTGAATTAA 2040 48.97 MGKNCRRTWFEKQDICSVRRIGFSAQQVRTVIKSKAVDMPPLGVQLYVTERQVVMDNGIVQVTFSNPDGIVIGIRYNGVDNLLEILNDEYNRGYWDLVWSPSASTTGSFDVIKATSFEVIVENEDQVELSFTRKWDLSLEGKLVPLEIDKRFVMLRGSSGFYSYAIYQHLKEWPGFNLGETRLAFKLRKDKFHYMAMADNRQRSMPLPDDRSPPRGRALAYPEAVLLVDPVEPELQGEVDDKYQYSCDNKDSSVHGWISTDPPVGFWLITPSNEFRSGGPVKQNLTSHVGPTTLAVFISAHYTGEDLVPKIGAGEAWKKVFGPVFIYLNSTYDSSDAIQLWEDAKAQETIEVQSWPYSFPASDDFPKSNQRGNIGGRLLVKDRYVSEDFIPANGAFVGLAPPGDVGSWQRESKGYQFWSRADESGYFSINGVRTGDYNLYAWVPGFIGDYRNDSLINISEGSEIDVGDIIYEAPREGATMWEIGIPDRSAAEFYVPDPNPGYVNKLYLNHPDKFRQYGLWERYTELYPDADLVYTIGVSDYTKDWFFAQVTRKTENGTFKGTTWQVKFKLDNVDRKGTYKLRIALASASLAELQVAVNDPKSKPAFSSGLIGRDNSIARHGIHGLHWLYNVDIPANRLVAGDNVIFFTQPRSTSPFQAIMYDYIRLESPPPPSSAHALN 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1723657 1729336 + MC08g0236 Mch8g0257 693878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0257 679 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 36 670 IPR051850 -
Mch8g0257 679 Pfam Rhamnogalacturonate lyase family 43 239 IPR010325 -
Mch8g0257 679 SUPERFAMILY Galactose mutarotase-like 57 331 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Mch8g0257 679 CDD RGL4_N 48 337 - -
Mch8g0257 679 CDD RGL4_M 370 469 IPR029413 -
Mch8g0257 679 SUPERFAMILY Starch-binding domain-like 391 468 IPR013784 GO:0030246(InterPro)
Mch8g0257 679 CDD RGL4_C 481 667 - -
Mch8g0257 679 Gene3D - 44 341 IPR014718 GO:0030246(InterPro)
Mch8g0257 679 FunFam Rhamnogalacturonate lyase B 367 466 - -
Mch8g0257 679 SUPERFAMILY Galactose-binding domain-like 477 667 IPR008979 -
Mch8g0257 679 Gene3D - 476 667 - -
Mch8g0257 679 Pfam Polysaccharide lyase family 4, domain II 393 465 IPR029413 -
Mch8g0257 679 Pfam Polysaccharide lyase family 4, domain III 479 666 IPR029411 -
Mch8g0257 679 Gene3D - 368 466 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0620 Mch-Chr10:4211984 Mch8g0257 Mch-Chr8:1723657 7.76E-275 dispersed
Mch11g0721 Mch-Chr11:4803313 Mch8g0257 Mch-Chr8:1723657 1.76E-62 dispersed
Mch11g0722 Mch-Chr11:4811154 Mch8g0257 Mch-Chr8:1723657 4.87E-276 dispersed
Mch1g1747 Mch-Chr1:17975037 Mch8g0257 Mch-Chr8:1723657 8.15E-241 transposed
Mch1g1361 Mch-Chr1:15568781 Mch8g0257 Mch-Chr8:1723657 5.37E-264 wgd
Mch11g0720 Mch-Chr11:4797070 Mch8g0257 Mch-Chr8:1723657 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0257 K18195 - csv:101215720 1187.56