Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0263 ATGGCGGCTGCAAATCCTCAGCCTTTGCAAGCGCGTCCTTTCCAGGATCATGTCCAAGTTCCTACAATGATGGGGGATGACGACGTTGAATATGAAGATGGTGGTGGTGGGGGTGGTGACGTTATGGATGATGTCGAGGAGGCTCATATGGCCTCGGTGAGCGTCGCGAACCTTGGAGGGGTGGTCATGGCGTCTAGAACTAGTGAACTTACGCTTTCGTTCGAAGGCGAGGTTTACGTTTTCCCCGCAGTTACTCCCGAAAAGGTACAAGCTGTGCTCCTACTTCTGGGAGGGCGTGATGTGCCAACTGGTGTACCTACAATGGAAGTACCATACGATCATAATAACAGGGGTATGGTTGACACCCCAAAGCGCTCCAATTTATCACGAAGAATAGCCTCCCTGGTTAGGTTTCGTGAAAAACGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACTGTACGGAAAGAGGTTGCACAAAGGATGCACCGTAAGAATGGCCAGTTTGCATCATTGAAGGAAAGTTCAGGTGCTTCAAGTTGGGAATCAGCACATAGTTGCCTCCAAGATGGCACCCGTTCTGAAACTGTTTTGCGGAAATGTCAACATTGTGGTGTCAGTGAAAACAATACACCTGCAATGCGTCGTGGGCCTGCCGGACCGAGAACTTTATGCAATGCATGCGGTTTGATGTGGGCAAACAAGGGCACGTTGAGAGATCTCAGCAAGGGAGGGAGAAATACGTCTCTGGATCATATGGAACCTGAAACCCCAATGGATATCAAACCCACAATCATGGAGGGAGAATTTTCGGGTATCCAGGATGAACATGGAACTCCTGAGGATCCTGGTAAAACTATGACTGAAGGCTCCAGCAATCCTTCCATTGACCCAGATGAGGAAGATCTAAATCAAACCACCGGAGACCTTACAAATTCGTTGCCCATAAGAATTGTCAATCATTCAGCAAATAGTGATGAGCAGGAACCTCTTGTTGAACTTGCTAATCCTTCGGATACGGATCTAGACATCCCCACTAACTTTGATTAG 1053 47.67 MAAANPQPLQARPFQDHVQVPTMMGDDDVEYEDGGGGGGDVMDDVEEAHMASVSVANLGGVVMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDVPTGVPTMEVPYDHNNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNTSLDHMEPETPMDIKPTIMEGEFSGIQDEHGTPEDPGKTMTEGSSNPSIDPDEEDLNQTTGDLTNSLPIRIVNHSANSDEQEPLVELANPSDTDLDIPTNFD 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1793576 1802350 - MC08g0242 Mch8g0263 693884

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0263 350 ProSitePatterns GATA-type zinc finger domain. 202 229 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g0263 350 SMART GATA_3 196 249 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g0263 350 MobiDBLite consensus disorder prediction 240 350 - -
Mch8g0263 350 Pfam GATA zinc finger 202 238 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g0263 350 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 197 246 - -
Mch8g0263 350 CDD ZnF_GATA 201 245 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g0263 350 ProSiteProfiles GATA-type zinc finger domain profile. 196 244 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g0263 350 ProSiteProfiles CCT domain profile. 131 173 IPR010402 GO:0005515(InterPro)
Mch8g0263 350 Pfam tify domain 66 97 IPR010399 -
Mch8g0263 350 MobiDBLite consensus disorder prediction 286 332 - -
Mch8g0263 350 Gene3D - 198 248 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Mch8g0263 350 Pfam CCT motif 131 172 IPR010402 GO:0005515(InterPro)
Mch8g0263 350 PANTHER GATA TRANSCRIPTION FACTOR 28 26 322 IPR045280 GO:0006355(InterPro)
Mch8g0263 350 ProSiteProfiles Tify domain profile. 63 98 IPR010399 -
Mch8g0263 350 SMART tify_2 63 98 IPR010399 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0263 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g0263 Mch-Chr8:1793576 Mch9g0149 Mch-Chr9:1162517 2.70E-68 dispersed
Mch8g0263 Mch-Chr8:1793576 Mch8g0264 Mch-Chr8:1804679 4.46E-59 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch9g0149 . 1 228 Tify Gene Family AT3G21175 57.5 2.2e-59 225.7
Mch8g0264 . 48 298 Tify Gene Family AT4G24470 53.9 2.2e-68 256.1
Mch4g0873 . 88 266 Tify Gene Family AT4G24470 60.9 1.3e-49 193.7
Mch9g0149 . 71 271 Tify Gene Family AT4G24470 52.0 7.6e-45 177.9
Mch9g0149 . 1 286 Tify Gene Family AT1G51600 60.6 6.5e-86 314.3
Mch8g0263 . 69 250 Tify Gene Family AT1G51600 57.7 2.3e-51 199.5
Mch4g0873 . 90 268 Tify Gene Family AT1G51600 61.5 5.2e-51 198.4
Mch8g0264 . 35 252 Tify Gene Family AT1G51600 52.3 1.7e-49 193.4
Mch8g0264 . 48 298 Tify Gene Family AT4G24470 53.9 2.2e-68 256.1
Mch4g0873 . 88 266 Tify Gene Family AT4G24470 60.9 1.3e-49 193.7
Mch9g0149 . 71 271 Tify Gene Family AT4G24470 52.0 7.6e-45 177.9
Mch9g0149 . 1 286 Tify Gene Family AT1G51600 60.6 6.5e-86 314.3
Mch8g0263 . 69 250 Tify Gene Family AT1G51600 57.7 2.3e-51 199.5
Mch4g0873 . 90 268 Tify Gene Family AT1G51600 61.5 5.2e-51 198.4
Mch8g0264 . 35 252 Tify Gene Family AT1G51600 52.3 1.7e-49 193.4
Mch9g0149 . 1 228 Tify Gene Family AT3G21175 57.5 2.2e-59 225.7
Mch7g1033 . 1 180 Tify Gene Family AT4G14713 51.6 5.4e-45 177.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003566 2 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 4 6 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43763 PF06203 CCT 1.30E-13 CL0281 Mch TF