Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0263 ATGGCGGCTGCAAATCCTCAGCCTTTGCAAGCGCGTCCTTTCCAGGATCATGTCCAAGTTCCTACAATGATGGGGGATGACGACGTTGAATATGAAGATGGTGGTGGTGGGGGTGGTGACGTTATGGATGATGTCGAGGAGGCTCATATGGCCTCGGTGAGCGTCGCGAACCTTGGAGGGGTGGTCATGGCGTCTAGAACTAGTGAACTTACGCTTTCGTTCGAAGGCGAGGTTTACGTTTTCCCCGCAGTTACTCCCGAAAAGGTACAAGCTGTGCTCCTACTTCTGGGAGGGCGTGATGTGCCAACTGGTGTACCTACAATGGAAGTACCATACGATCATAATAACAGGGGTATGGTTGACACCCCAAAGCGCTCCAATTTATCACGAAGAATAGCCTCCCTGGTTAGGTTTCGTGAAAAACGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACTGTACGGAAAGAGGTTGCACAAAGGATGCACCGTAAGAATGGCCAGTTTGCATCATTGAAGGAAAGTTCAGGTGCTTCAAGTTGGGAATCAGCACATAGTTGCCTCCAAGATGGCACCCGTTCTGAAACTGTTTTGCGGAAATGTCAACATTGTGGTGTCAGTGAAAACAATACACCTGCAATGCGTCGTGGGCCTGCCGGACCGAGAACTTTATGCAATGCATGCGGTTTGATGTGGGCAAACAAGGGCACGTTGAGAGATCTCAGCAAGGGAGGGAGAAATACGTCTCTGGATCATATGGAACCTGAAACCCCAATGGATATCAAACCCACAATCATGGAGGGAGAATTTTCGGGTATCCAGGATGAACATGGAACTCCTGAGGATCCTGGTAAAACTATGACTGAAGGCTCCAGCAATCCTTCCATTGACCCAGATGAGGAAGATCTAAATCAAACCACCGGAGACCTTACAAATTCGTTGCCCATAAGAATTGTCAATCATTCAGCAAATAGTGATGAGCAGGAACCTCTTGTTGAACTTGCTAATCCTTCGGATACGGATCTAGACATCCCCACTAACTTTGATTAG 1053 47.67 MAAANPQPLQARPFQDHVQVPTMMGDDDVEYEDGGGGGGDVMDDVEEAHMASVSVANLGGVVMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDVPTGVPTMEVPYDHNNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNTSLDHMEPETPMDIKPTIMEGEFSGIQDEHGTPEDPGKTMTEGSSNPSIDPDEEDLNQTTGDLTNSLPIRIVNHSANSDEQEPLVELANPSDTDLDIPTNFD 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1793576 1802350 - MC08g0242 Mch8g0263 693884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0263 350 ProSitePatterns GATA-type zinc finger domain. 202 229 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g0263 350 SMART GATA_3 196 249 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g0263 350 MobiDBLite consensus disorder prediction 240 350 - -
Mch8g0263 350 Pfam GATA zinc finger 202 238 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g0263 350 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 197 246 - -
Mch8g0263 350 CDD ZnF_GATA 201 245 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g0263 350 ProSiteProfiles GATA-type zinc finger domain profile. 196 244 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g0263 350 ProSiteProfiles CCT domain profile. 131 173 IPR010402 GO:0005515(InterPro)
Mch8g0263 350 Pfam tify domain 66 97 IPR010399 -
Mch8g0263 350 MobiDBLite consensus disorder prediction 286 332 - -
Mch8g0263 350 Gene3D - 198 248 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Mch8g0263 350 Pfam CCT motif 131 172 IPR010402 GO:0005515(InterPro)
Mch8g0263 350 PANTHER GATA TRANSCRIPTION FACTOR 28 26 322 IPR045280 GO:0006355(InterPro)
Mch8g0263 350 ProSiteProfiles Tify domain profile. 63 98 IPR010399 -
Mch8g0263 350 SMART tify_2 63 98 IPR010399 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g0263 Mch-Chr8:1793576 Mch9g0149 Mch-Chr9:1162517 2.70E-68 dispersed
Mch8g0263 Mch-Chr8:1793576 Mch8g0264 Mch-Chr8:1804679 4.46E-59 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43763 PF06203 CCT 1.30E-13 CL0281 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0263 - - - 0.0