Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0264 ATGTACGGACGCGCCCAGCCGCTGACCATGGCCGACCAGATCGCCTCCGGCCCCGACTGCGGCGACAGCGGCGACCACTTGGATAATCGCCTTGTTCGATACGGAGCCCACTCTCTCGATGACGGTGCTGGAGGAGTAGGCGGCATCATCGAAGATCTCAACCCTGATGCCGTTTATGCTTCCGCCGGTGATGGCTCAGACATGGCTGTTCAACGCAGCGATGGTTCGAGCCAGCTCACACTTTCATTCCGTGGCCAAGTATATCTTTTCGATGCAGTCTCTCCTGAGAAGGTACAGGCAGTATTATTGTTGTTGGGTGGTTGCGAACTATCTTCTGGCCAGCAAGGTGTGGATTTTGTAAATCAGAACCAAAGGAACGCCGTGGACTTCCCCGGACGCGTTAGTCAACCGCAGAGGGCAGCCTCATTAAATCGGTTTCGGCAGAAAAGGAAGGAGCGATGTTTTGACAAAAAAGTTAGATATAGCGTCCGTCAGGAGGTTGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCGTATAGCCTTGGCAGTGTCTCAGAGTCGGGTCAAGATGAAAATCCACCAGAAACTACATGCACAAATTGTGGCATAAGTTCAATGGCTACCCCAATGATGCGGCGAGGACCATCTGGGCCTAGATCGCTTTGCAATGCCTGTGGACTTTTTTGGGCAAACAGGGGCACGTTAAGGGATCTTTCAAAGAGAAATCCGGACCATCCAGTGACTCCGGCCGAGCAGTGTGAAAGTGATGCTGCCAAGGAGTTGGACTGCAGACGTGGCACCCATCCACACAGCAATCTGGCTTCTTTCTCTAATGGTGATAACTCTGCTTTAATGGCTGAGCATTAG 894 52.01 MYGRAQPLTMADQIASGPDCGDSGDHLDNRLVRYGAHSLDDGAGGVGGIIEDLNPDAVYASAGDGSDMAVQRSDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQGVDFVNQNQRNAVDFPGRVSQPQRAASLNRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSSKKPDGSYSLGSVSESGQDENPPETTCTNCGISSMATPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRNPDHPVTPAEQCESDAAKELDCRRGTHPHSNLASFSNGDNSALMAEH 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1804679 1808789 - MC08g0243 Mch8g0264 693885

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0264 297 ProSitePatterns GATA-type zinc finger domain. 207 234 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g0264 297 ProSiteProfiles Tify domain profile. 72 107 IPR010399 -
Mch8g0264 297 MobiDBLite consensus disorder prediction 172 213 - -
Mch8g0264 297 SMART tify_2 72 107 IPR010399 -
Mch8g0264 297 MobiDBLite consensus disorder prediction 248 267 - -
Mch8g0264 297 PANTHER GATA TRANSCRIPTION FACTOR 28 52 288 IPR045280 GO:0006355(InterPro)
Mch8g0264 297 Pfam GATA zinc finger 207 243 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g0264 297 CDD ZnF_GATA 206 253 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g0264 297 Gene3D - 197 255 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Mch8g0264 297 Pfam CCT motif 139 181 IPR010402 GO:0005515(InterPro)
Mch8g0264 297 SMART GATA_3 201 254 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g0264 297 Pfam tify domain 74 106 IPR010399 -
Mch8g0264 297 MobiDBLite consensus disorder prediction 272 297 - -
Mch8g0264 297 ProSiteProfiles GATA-type zinc finger domain profile. 201 260 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g0264 297 ProSiteProfiles CCT domain profile. 139 181 IPR010402 GO:0005515(InterPro)
Mch8g0264 297 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 200 252 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0264 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0873 Mch-Chr4:6334485 Mch8g0264 Mch-Chr8:1804679 1.36E-75 dispersed
Mch8g0264 Mch-Chr8:1804679 Mch9g0149 Mch-Chr9:1162517 2.22E-61 dispersed
Mch8g0263 Mch-Chr8:1793576 Mch8g0264 Mch-Chr8:1804679 4.46E-59 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch9g0149 . 1 228 Tify Gene Family AT3G21175 57.5 2.2e-59 225.7
Mch8g0264 . 48 298 Tify Gene Family AT4G24470 53.9 2.2e-68 256.1
Mch4g0873 . 88 266 Tify Gene Family AT4G24470 60.9 1.3e-49 193.7
Mch9g0149 . 71 271 Tify Gene Family AT4G24470 52.0 7.6e-45 177.9
Mch9g0149 . 1 286 Tify Gene Family AT1G51600 60.6 6.5e-86 314.3
Mch8g0263 . 69 250 Tify Gene Family AT1G51600 57.7 2.3e-51 199.5
Mch4g0873 . 90 268 Tify Gene Family AT1G51600 61.5 5.2e-51 198.4
Mch8g0264 . 35 252 Tify Gene Family AT1G51600 52.3 1.7e-49 193.4
Mch8g0264 . 48 298 Tify Gene Family AT4G24470 53.9 2.2e-68 256.1
Mch4g0873 . 88 266 Tify Gene Family AT4G24470 60.9 1.3e-49 193.7
Mch9g0149 . 71 271 Tify Gene Family AT4G24470 52.0 7.6e-45 177.9
Mch9g0149 . 1 286 Tify Gene Family AT1G51600 60.6 6.5e-86 314.3
Mch8g0263 . 69 250 Tify Gene Family AT1G51600 57.7 2.3e-51 199.5
Mch4g0873 . 90 268 Tify Gene Family AT1G51600 61.5 5.2e-51 198.4
Mch8g0264 . 35 252 Tify Gene Family AT1G51600 52.3 1.7e-49 193.4
Mch9g0149 . 1 228 Tify Gene Family AT3G21175 57.5 2.2e-59 225.7
Mch7g1033 . 1 180 Tify Gene Family AT4G14713 51.6 5.4e-45 177.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012239 2 1 2 0 2 0 0 1 1 0 0 0 1 1 1 1 1 2 0 1 1 0 1 0 0 1 1 5 1 1 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43764 PF06203 CCT 1.80E-15 CL0281 Mch TF