Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch8g0264 | ATGTACGGACGCGCCCAGCCGCTGACCATGGCCGACCAGATCGCCTCCGGCCCCGACTGCGGCGACAGCGGCGACCACTTGGATAATCGCCTTGTTCGATACGGAGCCCACTCTCTCGATGACGGTGCTGGAGGAGTAGGCGGCATCATCGAAGATCTCAACCCTGATGCCGTTTATGCTTCCGCCGGTGATGGCTCAGACATGGCTGTTCAACGCAGCGATGGTTCGAGCCAGCTCACACTTTCATTCCGTGGCCAAGTATATCTTTTCGATGCAGTCTCTCCTGAGAAGGTACAGGCAGTATTATTGTTGTTGGGTGGTTGCGAACTATCTTCTGGCCAGCAAGGTGTGGATTTTGTAAATCAGAACCAAAGGAACGCCGTGGACTTCCCCGGACGCGTTAGTCAACCGCAGAGGGCAGCCTCATTAAATCGGTTTCGGCAGAAAAGGAAGGAGCGATGTTTTGACAAAAAAGTTAGATATAGCGTCCGTCAGGAGGTTGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCGTATAGCCTTGGCAGTGTCTCAGAGTCGGGTCAAGATGAAAATCCACCAGAAACTACATGCACAAATTGTGGCATAAGTTCAATGGCTACCCCAATGATGCGGCGAGGACCATCTGGGCCTAGATCGCTTTGCAATGCCTGTGGACTTTTTTGGGCAAACAGGGGCACGTTAAGGGATCTTTCAAAGAGAAATCCGGACCATCCAGTGACTCCGGCCGAGCAGTGTGAAAGTGATGCTGCCAAGGAGTTGGACTGCAGACGTGGCACCCATCCACACAGCAATCTGGCTTCTTTCTCTAATGGTGATAACTCTGCTTTAATGGCTGAGCATTAG | 894 | 52.01 | MYGRAQPLTMADQIASGPDCGDSGDHLDNRLVRYGAHSLDDGAGGVGGIIEDLNPDAVYASAGDGSDMAVQRSDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQGVDFVNQNQRNAVDFPGRVSQPQRAASLNRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSSKKPDGSYSLGSVSESGQDENPPETTCTNCGISSMATPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRNPDHPVTPAEQCESDAAKELDCRRGTHPHSNLASFSNGDNSALMAEH | 297 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 1804679 | 1808789 | - | MC08g0243 | Mch8g0264 | 693885 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch8g0264 | 297 | ProSitePatterns | GATA-type zinc finger domain. | 207 | 234 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch8g0264 | 297 | ProSiteProfiles | Tify domain profile. | 72 | 107 | IPR010399 | - | |
Mch8g0264 | 297 | MobiDBLite | consensus disorder prediction | 172 | 213 | - | - | |
Mch8g0264 | 297 | SMART | tify_2 | 72 | 107 | IPR010399 | - | |
Mch8g0264 | 297 | MobiDBLite | consensus disorder prediction | 248 | 267 | - | - | |
Mch8g0264 | 297 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 52 | 288 | IPR045280 | GO:0006355(InterPro) | |
Mch8g0264 | 297 | Pfam | GATA zinc finger | 207 | 243 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch8g0264 | 297 | CDD | ZnF_GATA | 206 | 253 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch8g0264 | 297 | Gene3D | - | 197 | 255 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Mch8g0264 | 297 | Pfam | CCT motif | 139 | 181 | IPR010402 | GO:0005515(InterPro) | |
Mch8g0264 | 297 | SMART | GATA_3 | 201 | 254 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch8g0264 | 297 | Pfam | tify domain | 74 | 106 | IPR010399 | - | |
Mch8g0264 | 297 | MobiDBLite | consensus disorder prediction | 272 | 297 | - | - | |
Mch8g0264 | 297 | ProSiteProfiles | GATA-type zinc finger domain profile. | 201 | 260 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch8g0264 | 297 | ProSiteProfiles | CCT domain profile. | 139 | 181 | IPR010402 | GO:0005515(InterPro) | |
Mch8g0264 | 297 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 200 | 252 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch4g0873 | Mch-Chr4:6334485 | Mch8g0264 | Mch-Chr8:1804679 | 1.36E-75 | dispersed | |
Mch8g0264 | Mch-Chr8:1804679 | Mch9g0149 | Mch-Chr9:1162517 | 2.22E-61 | dispersed | |
Mch8g0263 | Mch-Chr8:1793576 | Mch8g0264 | Mch-Chr8:1804679 | 4.46E-59 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43764 | PF06203 | CCT | 1.80E-15 | CL0281 | Mch | TF |
Pathway information
