Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0264 ATGTACGGACGCGCCCAGCCGCTGACCATGGCCGACCAGATCGCCTCCGGCCCCGACTGCGGCGACAGCGGCGACCACTTGGATAATCGCCTTGTTCGATACGGAGCCCACTCTCTCGATGACGGTGCTGGAGGAGTAGGCGGCATCATCGAAGATCTCAACCCTGATGCCGTTTATGCTTCCGCCGGTGATGGCTCAGACATGGCTGTTCAACGCAGCGATGGTTCGAGCCAGCTCACACTTTCATTCCGTGGCCAAGTATATCTTTTCGATGCAGTCTCTCCTGAGAAGGTACAGGCAGTATTATTGTTGTTGGGTGGTTGCGAACTATCTTCTGGCCAGCAAGGTGTGGATTTTGTAAATCAGAACCAAAGGAACGCCGTGGACTTCCCCGGACGCGTTAGTCAACCGCAGAGGGCAGCCTCATTAAATCGGTTTCGGCAGAAAAGGAAGGAGCGATGTTTTGACAAAAAAGTTAGATATAGCGTCCGTCAGGAGGTTGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCGTATAGCCTTGGCAGTGTCTCAGAGTCGGGTCAAGATGAAAATCCACCAGAAACTACATGCACAAATTGTGGCATAAGTTCAATGGCTACCCCAATGATGCGGCGAGGACCATCTGGGCCTAGATCGCTTTGCAATGCCTGTGGACTTTTTTGGGCAAACAGGGGCACGTTAAGGGATCTTTCAAAGAGAAATCCGGACCATCCAGTGACTCCGGCCGAGCAGTGTGAAAGTGATGCTGCCAAGGAGTTGGACTGCAGACGTGGCACCCATCCACACAGCAATCTGGCTTCTTTCTCTAATGGTGATAACTCTGCTTTAATGGCTGAGCATTAG 894 52.01 MYGRAQPLTMADQIASGPDCGDSGDHLDNRLVRYGAHSLDDGAGGVGGIIEDLNPDAVYASAGDGSDMAVQRSDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQGVDFVNQNQRNAVDFPGRVSQPQRAASLNRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSSKKPDGSYSLGSVSESGQDENPPETTCTNCGISSMATPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRNPDHPVTPAEQCESDAAKELDCRRGTHPHSNLASFSNGDNSALMAEH 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1804679 1808789 - MC08g0243 Mch8g0264 693885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0264 297 ProSitePatterns GATA-type zinc finger domain. 207 234 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g0264 297 ProSiteProfiles Tify domain profile. 72 107 IPR010399 -
Mch8g0264 297 MobiDBLite consensus disorder prediction 172 213 - -
Mch8g0264 297 SMART tify_2 72 107 IPR010399 -
Mch8g0264 297 MobiDBLite consensus disorder prediction 248 267 - -
Mch8g0264 297 PANTHER GATA TRANSCRIPTION FACTOR 28 52 288 IPR045280 GO:0006355(InterPro)
Mch8g0264 297 Pfam GATA zinc finger 207 243 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g0264 297 CDD ZnF_GATA 206 253 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g0264 297 Gene3D - 197 255 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Mch8g0264 297 Pfam CCT motif 139 181 IPR010402 GO:0005515(InterPro)
Mch8g0264 297 SMART GATA_3 201 254 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g0264 297 Pfam tify domain 74 106 IPR010399 -
Mch8g0264 297 MobiDBLite consensus disorder prediction 272 297 - -
Mch8g0264 297 ProSiteProfiles GATA-type zinc finger domain profile. 201 260 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g0264 297 ProSiteProfiles CCT domain profile. 139 181 IPR010402 GO:0005515(InterPro)
Mch8g0264 297 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 200 252 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0873 Mch-Chr4:6334485 Mch8g0264 Mch-Chr8:1804679 1.36E-75 dispersed
Mch8g0264 Mch-Chr8:1804679 Mch9g0149 Mch-Chr9:1162517 2.22E-61 dispersed
Mch8g0263 Mch-Chr8:1793576 Mch8g0264 Mch-Chr8:1804679 4.46E-59 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43764 PF06203 CCT 1.80E-15 CL0281 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0264 - - - 0.0