Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0272 ATGGTTCATGCTGGCTCTACCCAATTTTATCATAAATTGGGGATTCAAAGTGTTCATAGATGCAATAAGTTAGATATTAGTGTCAAGGGAAAGACTCGTCTACACCTTGTTACCATCATTCCTACATCACACGGTTTGAGGTATGATTCTGGAAGTCTTCAGCTGTTACGCAGTGTGAGTCGCCCAAGGTATCCTGTGCCTTCCAGAGCAAATTTTTTTGTGTGTCGATCTGTTCTGGAATCAGGTGGCGGAGCTGGGACTGCTGTTCTAAAATCTGCAGCTGTGGTTCTGACGAGATCTTATGGGGCTTTACGTGGAAGTCCTCTGTTACTTAAATTGATTCCAGCAGCTTGTATCATTGCTTTTGCTGCTTGGGGTGTTGGGCCTCTTATGCGTTTTGGGAGGGTTCTATTTCTTCATGAGCCAGATGGCAGTTGGAAGAAAAGTAGTACATACTACGTTACGACTTCTTATGTTCAGCCTTTACTGCTGTGGACGGGAGCTACACTGATCTGCAGGGCATTGGATCCAGTAGTGTTACCTTCAGTAGCCAGTCAGGCCGTAAAACAACGACTTCTGAATTTTGTTCGATCTTTGTCTACTGTTCTGGCATTCGCTTATTGTATATCAAGCTTGATTCAACAAGTACAAAAATTCGCTACTGAATCAAATGACTCAAGTGATGCAAGAAATATGGGCTTTGATTTTGCTGGGAAAGCTGTTTATACTGCAGTCTGGATTGCCGCCCTTTCATTGTTCATGGAGTTGCTCGGGTTTTCTACCCAGAAGTGGCTCACAGCTGGGGGTCTTGGAACTGTATTGCTTACTCTTGCTGGTCGTGAGATATTTACTAATTTTCTTTCAAGTGTAATGATTCATGCAACAAGACCATTTGTGGTAAATGAATGGATTCAGACAAAGATTGATGGATACGAAGTCTCTGGAACAGTTGAGCACGTTGGTTGGTGGTCGCCAACCATTATCCGAGGCGATGATCGTGAAGCAGTCCATATTCCAAATCACAAATTTACTGTCAGTATTGTGCGGAATCTTACCCAGAAGACTCATTGGCGTATCAAGACCCATCTTGCCATCAGCCACTTAGATGTTAATAAGATTAATTATATTGTAGCTGATATGCGTAAAGTTTTGTCCAAAAATCCTCAAGTGGAACAGCAAAGGTTACACCGTAGAATCTTTTTGGATAACATCAATCCTGAAAATCAGGCTCTTATGATTATGGTTTCTTGCTTTGTGAAAACTTCTCGTTTTGAAGAATACCTGTGTGTCAAGGAGGCAATTCTCTTGGATCTCCTCAGGGTTATCAGCCATCATAGGGCCCGGCTTGCCACGCCAATTCGCACTGTTCAGAAAATATACAGTGAGGCTGCTGACTTGGAAAATGTACCGTTTTCCGAGACCATGTATTCTCCTCGTTCTGGAGCAGCTACTAACCGTCCTCTGCTTCTTATTGAGCCATCTTATAAAATCAACGGCGACGATAAAGCCAAAGTCTCTAGTCGTCCCGCTCGCCCATTGAATGAAGAAAAGGAAGCCAAGCAAGAGGCAGTCTCAACATCAGGAACGAAACCCTCCGATGCAGGAGCTGGATCAATGGATGATAAAAAATCAACTTCTCCATCTGGTGCCACTTCCAAGCCTTCAACAGGGCCAATGTCCAACACACAGACCCAGAACAATCTAGCACCCGAAACTTCAGAACAAAGCAGTATCGAAAAGCCTGAGATTAAAGGAGAAAAGAAATATCTAATGGGACTGAACTCCAAGGATACTACACCAAGAGTGACTTCGCCGAAAAGGCCATCCTCAGCCTCTGAACCCGGCAGCGAGAAAGCTGATATTCCTTTCTCTAGCTCGCAGAATAAACAAGACGGTGAGAAGCTTTCTGCATCATCAGTGACCAGGCCACCATTGGAGGAGAATATAGTCCTGGGAGTTGCCTTGGAAGGCTCCAAAAGAACTCTTCCAATTGATGAAGATTTGGATCCATCTCCCTTTCACTCTCCTGCAGATTCAAAAGAAATGGCCACACAGAGGAATGGGAGCGAGTTTCCTCCCAATAGTAAGGATATAAAAGATGGCCAGATGCCTGCAGTTCCAAGCGCCACGAAAAATGATTGA 2142 44.07 MVHAGSTQFYHKLGIQSVHRCNKLDISVKGKTRLHLVTIIPTSHGLRYDSGSLQLLRSVSRPRYPVPSRANFFVCRSVLESGGGAGTAVLKSAAVVLTRSYGALRGSPLLLKLIPAACIIAFAAWGVGPLMRFGRVLFLHEPDGSWKKSSTYYVTTSYVQPLLLWTGATLICRALDPVVLPSVASQAVKQRLLNFVRSLSTVLAFAYCISSLIQQVQKFATESNDSSDARNMGFDFAGKAVYTAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIDGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVSIVRNLTQKTHWRIKTHLAISHLDVNKINYIVADMRKVLSKNPQVEQQRLHRRIFLDNINPENQALMIMVSCFVKTSRFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYSEAADLENVPFSETMYSPRSGAATNRPLLLIEPSYKINGDDKAKVSSRPARPLNEEKEAKQEAVSTSGTKPSDAGAGSMDDKKSTSPSGATSKPSTGPMSNTQTQNNLAPETSEQSSIEKPEIKGEKKYLMGLNSKDTTPRVTSPKRPSSASEPGSEKADIPFSSSQNKQDGEKLSASSVTRPPLEENIVLGVALEGSKRTLPIDEDLDPSPFHSPADSKEMATQRNGSEFPPNSKDIKDGQMPAVPSATKND 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1854322 1861231 + MC08g0251 Mch8g0272 693893

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0272 713 MobiDBLite consensus disorder prediction 596 611 - -
Mch8g0272 713 MobiDBLite consensus disorder prediction 524 576 - -
Mch8g0272 713 MobiDBLite consensus disorder prediction 619 643 - -
Mch8g0272 713 Gene3D - 194 296 - -
Mch8g0272 713 MobiDBLite consensus disorder prediction 499 523 - -
Mch8g0272 713 MobiDBLite consensus disorder prediction 678 692 - -
Mch8g0272 713 Pfam Mechanosensitive ion channel, beta-domain 282 352 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Mch8g0272 713 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 699 IPR045042 -
Mch8g0272 713 SUPERFAMILY Sm-like ribonucleoproteins 282 352 IPR010920 -
Mch8g0272 713 Gene3D - 298 353 IPR023408 -
Mch8g0272 713 MobiDBLite consensus disorder prediction 660 674 - -
Mch8g0272 713 MobiDBLite consensus disorder prediction 499 647 - -
Mch8g0272 713 MobiDBLite consensus disorder prediction 577 591 - -
Mch8g0272 713 MobiDBLite consensus disorder prediction 660 713 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0272 K22047 - - csv:101213477 1174.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0606 Mch-Chr10:4099653 Mch8g0272 Mch-Chr8:1854322 7.52E-230 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch5g0406 . 154 520 Mechanosensitive Ion Channel Family AT4G00290 65.0 3.3e-143 505.4
Mch8g0272 . 11 702 Mechanosensitive Ion Channel Family AT5G10490 57.3 9.7e-199 690.3
Mch10g0606 . 64 764 Mechanosensitive Ion Channel Family AT5G10490 55.1 1.0e-192 670.2
Mch8g0272 . 11 682 Mechanosensitive Ion Channel Family AT1G58200 57.5 8.6e-195 677.2
Mch10g0606 . 49 731 Mechanosensitive Ion Channel Family AT1G58200 50.7 1.1e-170 597.0
Mch2g0398 . 50 942 Mechanosensitive Ion Channel Family AT1G53470 56.0 4.6e-265 911.0
Mch4g0458 . 83 948 Mechanosensitive Ion Channel Family AT1G53470 50.7 3.5e-233 805.1
Mch2g0398 . 50 937 Mechanosensitive Ion Channel Family AT3G14810 53.7 1.5e-249 859.4
Mch2g0398 . 50 942 Mechanosensitive Ion Channel Family AT1G78610 60.0 1.9e-284 975.3
Mch4g0458 . 58 946 Mechanosensitive Ion Channel Family AT1G78610 55.9 6.0e-262 900.6
Mch11g0085 . 60 704 Mechanosensitive Ion Channel Family AT1G78610 50.3 1.8e-181 633.3
Mch2g0398 . 227 938 Mechanosensitive Ion Channel Family AT2G17000 61.3 5.0e-237 817.8
Mch4g0458 . 271 949 Mechanosensitive Ion Channel Family AT2G17000 56.9 9.6e-212 733.8
Mch11g0446 . 17 735 Mechanosensitive Ion Channel Family AT5G19520 51.7 3.1e-190 662.1
Mch11g0446 . 67 735 Mechanosensitive Ion Channel Family AT5G12080 58.3 6.4e-204 707.6
Mch6g0955 . 58 749 Mechanosensitive Ion Channel Family AT5G12080 52.3 2.1e-191 666.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001552 2 6 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 6 2 2 71