Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0275 ATGGCGAGAGAGAAGATAAAGATAAAGAAGATCGATAACCTGACAGCGAGGCAGGTGACGTTTTCGAAGAGGAGGAGAGGGCTAATGAAGAAGGCGGAGGAGCTGGCGGTGCTCTGCGACGCCGACGTGGCGCTGCTCATTTTCTCCGCCACCGGCAAGCTCTTCGAGTACTCCAGTTCCAGCATTAAGGATGTTATTGGGAGATATAATTTGCATTCTAATAACATTGGAAAACTGGAATATCCATCTCTCGAGCTACAGCTCGAGAATAGCAACCACGTTCGATTGTGCAAGGACGTTGCAGATAAGAGCCATCAACTGAGGCAAATGAGGGGAGAGGATCTTCAAGGACTGAACTTAGAAGATTTGAAGCAATTGGAAAGAGTCCTTGAAGTAGGCCTCGCTCGGGTCCTCCACACCAAGGAACAGAAGATTATGAGTGAAATTAGTGCACTTGAGCTCAAGGGGGCAAGGCTGATGGAAGAGAACAGGAAATTAAAACAAAAGATGTTAAGGTTGTCGAATGAAAGAATACCAGTGCTTGCGGATTCCGACGTTGGGATCCCGGAAGAGGGCGGCGTTTCGTCGGAATCCGCCGCCAATGTCTGCAGCTGCAACAGCGGCCCTCCCGCCGACGAGGACAGCTCCGACACCTCTCTCAAATTAGGGCTTCCTTGCTCAAACTGA 687 49.93 MAREKIKIKKIDNLTARQVTFSKRRRGLMKKAEELAVLCDADVALLIFSATGKLFEYSSSSIKDVIGRYNLHSNNIGKLEYPSLELQLENSNHVRLCKDVADKSHQLRQMRGEDLQGLNLEDLKQLERVLEVGLARVLHTKEQKIMSEISALELKGARLMEENRKLKQKMLRLSNERIPVLADSDVGIPEEGGVSSESAANVCSCNSGPPADEDSSDTSLKLGLPCSN 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1878009 1883426 - MC08g0254 Mch8g0275 693896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0275 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 195 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Mch8g0275 228 Gene3D - 13 82 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g0275 228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g0275 228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g0275 228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g0275 228 MobiDBLite consensus disorder prediction 186 228 - -
Mch8g0275 228 MobiDBLite consensus disorder prediction 197 228 - -
Mch8g0275 228 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g0275 228 Coils Coil 149 176 - -
Mch8g0275 228 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g0275 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g0275 228 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Mch8g0275 228 FunFam Transcription factor, MADS-box 13 83 - -
Mch8g0275 228 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g0275 228 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch8g0275 228 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g0275 228 Pfam K-box region 90 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0375 Mch-Chr10:2482103 Mch8g0275 Mch-Chr8:1878009 9.01E-56 dispersed
Mch3g1734 Mch-Chr3:18781206 Mch8g0275 Mch-Chr8:1878009 5.45E-17 dispersed
Mch8g0275 Mch-Chr8:1878009 Mch8g2368 Mch-Chr8:26794936 3.35E-31 dispersed
Mch1g1377 Mch-Chr1:15668564 Mch8g0275 Mch-Chr8:1878009 1.76E-75 wgd
Mch1g1360 Mch-Chr1:15559663 Mch8g0275 Mch-Chr8:1878009 1.32E-33 wgd
Mch11g0724 Mch-Chr11:4832939 Mch8g0275 Mch-Chr8:1878009 3.32E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43766 PF01486 K-box 9.00E-14 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0275 - - - 0.0