Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch8g0275 | ATGGCGAGAGAGAAGATAAAGATAAAGAAGATCGATAACCTGACAGCGAGGCAGGTGACGTTTTCGAAGAGGAGGAGAGGGCTAATGAAGAAGGCGGAGGAGCTGGCGGTGCTCTGCGACGCCGACGTGGCGCTGCTCATTTTCTCCGCCACCGGCAAGCTCTTCGAGTACTCCAGTTCCAGCATTAAGGATGTTATTGGGAGATATAATTTGCATTCTAATAACATTGGAAAACTGGAATATCCATCTCTCGAGCTACAGCTCGAGAATAGCAACCACGTTCGATTGTGCAAGGACGTTGCAGATAAGAGCCATCAACTGAGGCAAATGAGGGGAGAGGATCTTCAAGGACTGAACTTAGAAGATTTGAAGCAATTGGAAAGAGTCCTTGAAGTAGGCCTCGCTCGGGTCCTCCACACCAAGGAACAGAAGATTATGAGTGAAATTAGTGCACTTGAGCTCAAGGGGGCAAGGCTGATGGAAGAGAACAGGAAATTAAAACAAAAGATGTTAAGGTTGTCGAATGAAAGAATACCAGTGCTTGCGGATTCCGACGTTGGGATCCCGGAAGAGGGCGGCGTTTCGTCGGAATCCGCCGCCAATGTCTGCAGCTGCAACAGCGGCCCTCCCGCCGACGAGGACAGCTCCGACACCTCTCTCAAATTAGGGCTTCCTTGCTCAAACTGA | 687 | 49.93 | MAREKIKIKKIDNLTARQVTFSKRRRGLMKKAEELAVLCDADVALLIFSATGKLFEYSSSSIKDVIGRYNLHSNNIGKLEYPSLELQLENSNHVRLCKDVADKSHQLRQMRGEDLQGLNLEDLKQLERVLEVGLARVLHTKEQKIMSEISALELKGARLMEENRKLKQKMLRLSNERIPVLADSDVGIPEEGGVSSESAANVCSCNSGPPADEDSSDTSLKLGLPCSN | 228 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 1878009 | 1883426 | - | MC08g0254 | Mch8g0275 | 693896 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch8g0275 | 228 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 195 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Mch8g0275 | 228 | Gene3D | - | 13 | 82 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch8g0275 | 228 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch8g0275 | 228 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch8g0275 | 228 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch8g0275 | 228 | MobiDBLite | consensus disorder prediction | 186 | 228 | - | - | |
Mch8g0275 | 228 | MobiDBLite | consensus disorder prediction | 197 | 228 | - | - | |
Mch8g0275 | 228 | SUPERFAMILY | SRF-like | 3 | 74 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch8g0275 | 228 | Coils | Coil | 149 | 176 | - | - | |
Mch8g0275 | 228 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch8g0275 | 228 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch8g0275 | 228 | CDD | MADS_MEF2_like | 2 | 75 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Mch8g0275 | 228 | FunFam | Transcription factor, MADS-box | 13 | 83 | - | - | |
Mch8g0275 | 228 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch8g0275 | 228 | ProSiteProfiles | K-box domain profile. | 86 | 176 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Mch8g0275 | 228 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch8g0275 | 228 | Pfam | K-box region | 90 | 170 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch10g0375 | Mch-Chr10:2482103 | Mch8g0275 | Mch-Chr8:1878009 | 9.01E-56 | dispersed | |
Mch3g1734 | Mch-Chr3:18781206 | Mch8g0275 | Mch-Chr8:1878009 | 5.45E-17 | dispersed | |
Mch8g0275 | Mch-Chr8:1878009 | Mch8g2368 | Mch-Chr8:26794936 | 3.35E-31 | dispersed | |
Mch1g1377 | Mch-Chr1:15668564 | Mch8g0275 | Mch-Chr8:1878009 | 1.76E-75 | wgd | |
Mch1g1360 | Mch-Chr1:15559663 | Mch8g0275 | Mch-Chr8:1878009 | 1.32E-33 | wgd | |
Mch11g0724 | Mch-Chr11:4832939 | Mch8g0275 | Mch-Chr8:1878009 | 3.32E-35 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43766 | PF01486 | K-box | 9.00E-14 | No_clan | Mch | TF |
Pathway information
