Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0280 ATGAAAGGCGATTTCGGTCACCCCAAGAGCAAAACTTCCAATATGTTATCCAAATTCCATCTCGCCCACCCGTTTACCCACCCGCCCCACCAACCCGACAACGACATCTCCTCCGCCGCCGCCGCCGCTGCCGGCCCTCCGCCGCTCAAACATCACCTCCATGACCATACCTCCGCCGCCGATGGCTCGACCATTGAGGTGGTACGGCGGCCGAGGGGCCGCCCCCCGGGCTCCAAGAACAAACCCAAACCGCCGCTCGTCGTGACCCGAGAACCCGAACCCGCTATGCGGCCGTACGTTCTAGAAGTGCCCGGCGGAAACGACGTCGTTGAAGCCATTGCCCGATTCTGCCGTCGGAAGAATATGGGTCTTTGTGTACTTAACGGCTCCGGTATCGTCGCTAACGTCTCCCTCCGGCAGCCCTCTGCGACGCCCGGCGCGACCGTCACGTTCCACGGCCGCTTCGAGATCCTCTCTATTTGCGCCACCGTGTTACCTCACACGACGCCGTACCCCGTCCCCAACGGCTTCACTATCTCCCTCGCCGGACCGCAGGGCCAAATCGTCGGCGGATTGGTCGCCGGCGCGTTAATCGCCGCCGGTACCGTTTTCATCGTCGCCTCATCGTTTAACAATCCGTTGTACCATCGGCTTCCCGACGAGGAGGAGATTAAGAATTTGGGCTCCGGCGGCAGCGGCGGCGAGGGTCACTCTCCACACGTCTCCGGCGGTGGAGACAGTAGCGGCCACGGACAGCCTATGGTGGAGCCGTGTGGAGTGGCTAGCTACAGTTGCCACGCGCCCTCCGACGTAATTTGGGCGCCGACGGCGAGGCAACCGCCGCCGCCA 849 63.13 MKGDFGHPKSKTSNMLSKFHLAHPFTHPPHQPDNDISSAAAAAAGPPPLKHHLHDHTSAADGSTIEVVRRPRGRPPGSKNKPKPPLVVTREPEPAMRPYVLEVPGGNDVVEAIARFCRRKNMGLCVLNGSGIVANVSLRQPSATPGATVTFHGRFEILSICATVLPHTTPYPVPNGFTISLAGPQGQIVGGLVAGALIAAGTVFIVASSFNNPLYHRLPDEEEIKNLGSGGSGGEGHSPHVSGGGDSSGHGQPMVEPCGVASYSCHAPSDVIWAPTARQPPPP 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1926045 1926893 + MC08g0259 Mch8g0280 693901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0280 283 ProSiteProfiles PPC domain profile profile. 93 231 IPR005175 -
Mch8g0280 283 FunFam AT-hook motif nuclear-localized protein 97 229 - -
Mch8g0280 283 CDD DUF296 97 210 IPR005175 -
Mch8g0280 283 Gene3D - 96 228 - -
Mch8g0280 283 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 54 249 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Mch8g0280 283 MobiDBLite consensus disorder prediction 223 255 - -
Mch8g0280 283 MobiDBLite consensus disorder prediction 1 89 - -
Mch8g0280 283 Pfam Plants and Prokaryotes Conserved (PCC) domain 97 211 IPR005175 -
Mch8g0280 283 SUPERFAMILY AF0104/ALDC/Ptd012-like 95 222 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g0280 Mch-Chr8:1926045 Mch8g2974 Mch-Chr8:32422099 1.39E-52 dispersed
Mch6g1244 Mch-Chr6:9789390 Mch8g0280 Mch-Chr8:1926045 1.03E-41 transposed
Mch11g0706 Mch-Chr11:4654981 Mch8g0280 Mch-Chr8:1926045 4.15E-98 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0280 - - - 0.0