Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch8g0296 | ATGGAGCTCGACGAACACGTCTTCATGGAGGAGTTGCTGGCTCTACGAAGAGAAGCAAATTGGGATGCCATTCCAACCGAAATCAGCGATCTCTGCTCAACTGCTTGGAGTTTCGATTACTGTTTCGATCAGAGCACCGCCAATTTCCACCAAAATTCTTCATCGGAGGCTCTGTCCGCTCAGAACCTCGACGAATTCTACCATCCTCTGGCCAGTGAGTTCTCAGTTCCACAAGTGGCCGATTCCGCCTATGCCGCCATGGAAGTAGCCGCGCCTCTGCCGTTCCAAGCAGACCGTCCGAGTGCGGAGCGAGAAGGGGAAGGAGAAGTAGAGGAAGAGGAATTAGGTTTTCTTGCGGATGAGATTCAGAATATGGAGGTTCAAGTTCAATCGGCCTGCAAAATGGAGCCGAATCTATCTCCAGAAATCCCCGTTTTCAACATCGGAACGTGCTCCCTCGAACGGAAGAACAGACCGAAGAAATTGCAGGGGCAGCCATCGAAGAACCTCATGGCCGAGAGAAGGAGAAGGAAGCGCTTGAACGATCGCCTCTCGATGCTCAGATCCATCGTCCCGAAGATCAGCAAGATGGACAGAACTGCGATTCTGGCGGATGCAATCGAGTACATGAAAGAACTGCTGGAGAAGATCGGGAATCTGCAGAGAGAAGTGGATCGGTCGAATCAGACGAATTCATTCAACGACACAAAACCGAGCGAATTCGTAGTGAGGAATTCACCAAAATTTGAGGTGGAAAGTGGAAACGGGAGCACGAGGATCGAGATTTGCTGCGCAGCGAAACCAGGATTGCTATTATCAACGGTGAATACGATTGAAGCATTGGGGCTTGAGATTCAACAGTGCGTAATTAGCTGCTTCAATGACTTCGCATTGCAGGCCACTTGTTCTGAGGAACTGAAGCAGAAAGCAGAACGGAAGCCTGGAGAATTGAAGGAAGCTTTATTTAGGAATGCAGGCTATGGAGGAAGATGCTTGTAG | 999 | 49.85 | MELDEHVFMEELLALRREANWDAIPTEISDLCSTAWSFDYCFDQSTANFHQNSSSEALSAQNLDEFYHPLASEFSVPQVADSAYAAMEVAAPLPFQADRPSAEREGEGEVEEEELGFLADEIQNMEVQVQSACKMEPNLSPEIPVFNIGTCSLERKNRPKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYMKELLEKIGNLQREVDRSNQTNSFNDTKPSEFVVRNSPKFEVESGNGSTRIEICCAAKPGLLLSTVNTIEALGLEIQQCVISCFNDFALQATCSEELKQKAERKPGELKEALFRNAGYGGRCL | 332 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 2051861 | 2054314 | + | MC08g0274 | Mch8g0296 | 693917 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch8g0296 | 332 | Pfam | Helix-loop-helix DNA-binding domain | 171 | 213 | IPR011598 | GO:0046983(InterPro) | |
| Mch8g0296 | 332 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 168 | 231 | IPR036638 | GO:0046983(InterPro) | |
| Mch8g0296 | 332 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 138 | 327 | IPR051358 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER) | |
| Mch8g0296 | 332 | Coils | Coil | 203 | 230 | - | - | |
| Mch8g0296 | 332 | SMART | finulus | 170 | 219 | IPR011598 | GO:0046983(InterPro) | |
| Mch8g0296 | 332 | CDD | ACT_UUR-ACR-like | 258 | 299 | - | - | |
| Mch8g0296 | 332 | Gene3D | - | 155 | 231 | IPR036638 | GO:0046983(InterPro) | |
| Mch8g0296 | 332 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 164 | 213 | IPR011598 | GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch8g0296 | Mch-Chr8:2051861 | Mch8g2611 | Mch-Chr8:29319891 | 1.47E-10 | dispersed | |
| Mch8g1350 | Mch-Chr8:9987288 | Mch8g0296 | Mch-Chr8:2051861 | 9.09E-37 | transposed | |
| Mch1g1351 | Mch-Chr1:15515638 | Mch8g0296 | Mch-Chr8:2051861 | 8.98E-82 | wgd | |
| Mch11g0736 | Mch-Chr11:4943886 | Mch8g0296 | Mch-Chr8:2051861 | 2.88E-98 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 43769 | PF00010 | HLH | 6.10E-10 | No_clan | Mch | TF |
Pathway information