Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0323 TTAGCCACTTCCCTCTCTCCCTCCCTCTCACTATTTTTTTTTTCTTCTCCCTCTCCCTCTCTTCTCTTGCGTTCTATCGCGCTGCGCCACACTTCCATGGAACTTCCCGACTATTTTCAGATCAATAATGCAGCATACTGCTCATCCCAATTCGTCGCCGAAACTCGCCACTCCTCCTCCGATAACGACACCGACGGCGGCTGCGGCGGCGAGCATTTCATCGTCGAGGAACTTCTCGACTTCTCCAACGACGACGGCGTCGCGGCCGACGTTAGCAGCTTCAACGGAAACGATAATAATAATCCCTCCGTCTCCGTCTCCGTGATCGAGAGTTGCAATTCGTCGAATTCCTTCTCCTGCTGCGAACCCAATTCGTTCCTCGACGACATTACTCACTCCAATTTAGGCGACGCAAAATTCTCCACCGAACTCTGCGTTCCGTACGACGATTTAGCTGAGCTGGAATGGCTTTCAAACTTCGTAGAGGAATCATTTTCCAGCGAGGACATGCAAAAGCTGGAGCTAATCTCCGGCGTCAAAGTCAAATCCGACGAAACCTTCCAAATCCGGCAGCCCTCCCCCGCCGTCGCCGTCGCCGCCGCCGAAATCTTCAAACCCGACATCGTCTCCGTTCCGGCCAAGGCCCGCAGCAAACGCTCACGCGCCGCCGTTCCCACCAACTGGAACAACTCCCGCCTCCTCCCCCTCTCTCCGACCACCTCCTCCTCCGAACTCGACGTCTTAGCCGTCGCCGCCACGCCGCCGCACCCCGGAAAGAAAGCCACCATTAAGGCCACGGTCACAGCAAAGAAGAAGGATTGTCCGGACGCCGGCGCGTCGCCCGGAGAGGGGCGGAAGTGCATGCACTGCGCCACCGACAAGACGCCTCAGTGGCGGACGGGCCCAATGGGCCCAAAGACGCTGTGCAATGCGTGCGGCGTCCGGTACAAGTCCGGCCGGCTGGTGCCGGAGTACCGGCCCGCTGCCAGCCCCACGTTTGTTCTCACTAAGCATTCAAATTCTCACCGGAAGGTGCTGGAGCTCCGGCGGCAGAAGGAGCTTCAAAGAACACAGCAGCAGCAGCATCAGCATCAGCTGATTCTTGATCATCATCAGAATATGATATTTGATGCATCCAACGGTGACGATTATCTCATCCACCAACATGTGGGCCCCGATTTTCGGCAGCTGATCTAA 1197 56.81 LATSLSPSLSLFFFSSPSPSLLLRSIALRHTSMELPDYFQINNAAYCSSQFVAETRHSSSDNDTDGGCGGEHFIVEELLDFSNDDGVAADVSSFNGNDNNNPSVSVSVIESCNSSNSFSCCEPNSFLDDITHSNLGDAKFSTELCVPYDDLAELEWLSNFVEESFSSEDMQKLELISGVKVKSDETFQIRQPSPAVAVAAAEIFKPDIVSVPAKARSKRSRAAVPTNWNNSRLLPLSPTTSSSELDVLAVAATPPHPGKKATIKATVTAKKKDCPDAGASPGEGRKCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKELQRTQQQQHQHQLILDHHQNMIFDASNGDDYLIHQHVGPDFRQLI 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2267097 2269567 - MC08g0297 Mch8g0323 693944

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0323 398 CDD ZnF_GATA 286 333 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g0323 398 ProSiteProfiles GATA-type zinc finger domain profile. 281 317 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g0323 398 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 283 345 - -
Mch8g0323 398 PANTHER GATA TRANSCRIPTION FACTOR 72 353 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Mch8g0323 398 ProSitePatterns GATA-type zinc finger domain. 287 312 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g0323 398 SMART GATA_3 281 331 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g0323 398 FunFam GATA transcription factor 278 364 - -
Mch8g0323 398 Pfam GATA zinc finger 287 321 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g0323 398 Gene3D - 282 331 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0323 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g1067 Mch-Chr2:7179548 Mch8g0323 Mch-Chr8:2267097 4.49E-34 dispersed
Mch8g0323 Mch-Chr8:2267097 Mch9g0313 Mch-Chr9:2348359 9.33E-80 dispersed
Mch11g0766 Mch-Chr11:5175344 Mch8g0323 Mch-Chr8:2267097 3.93E-104 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch8g0323 . 115 399 C2C2-Gata Transcription Factor Family AT5G25830 55.1 6.5e-71 264.6
Mch11g0766 . 83 352 C2C2-Gata Transcription Factor Family AT5G25830 52.0 1.7e-66 250.0
Mch8g1192 . 68 241 C2C2-Gata Transcription Factor Family AT2G45050 50.2 4.1e-44 175.3
Mch10g0751 . 27 316 C2C2-Gata Transcription Factor Family AT5G66320 51.0 7.1e-65 244.6
Mch1g1560 . 104 269 C2C2-Gata Transcription Factor Family AT4G36240 52.8 4.3e-40 161.8
Mch11g0766 . 71 351 C2C2-Gata Transcription Factor Family AT4G32890 51.0 6.9e-59 224.6
Mch10g1588 . 1 516 C2C2-Gata Transcription Factor Family AT4G17570 53.7 5.8e-135 478.0
Mch6g2117 . 1 518 C2C2-Gata Transcription Factor Family AT4G17570 52.4 3.2e-133 472.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002406 3 2 1 1 0 1 2 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43771 PF00320 GATA 2.10E-15 CL0167 Mch TF