Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0323 TTAGCCACTTCCCTCTCTCCCTCCCTCTCACTATTTTTTTTTTCTTCTCCCTCTCCCTCTCTTCTCTTGCGTTCTATCGCGCTGCGCCACACTTCCATGGAACTTCCCGACTATTTTCAGATCAATAATGCAGCATACTGCTCATCCCAATTCGTCGCCGAAACTCGCCACTCCTCCTCCGATAACGACACCGACGGCGGCTGCGGCGGCGAGCATTTCATCGTCGAGGAACTTCTCGACTTCTCCAACGACGACGGCGTCGCGGCCGACGTTAGCAGCTTCAACGGAAACGATAATAATAATCCCTCCGTCTCCGTCTCCGTGATCGAGAGTTGCAATTCGTCGAATTCCTTCTCCTGCTGCGAACCCAATTCGTTCCTCGACGACATTACTCACTCCAATTTAGGCGACGCAAAATTCTCCACCGAACTCTGCGTTCCGTACGACGATTTAGCTGAGCTGGAATGGCTTTCAAACTTCGTAGAGGAATCATTTTCCAGCGAGGACATGCAAAAGCTGGAGCTAATCTCCGGCGTCAAAGTCAAATCCGACGAAACCTTCCAAATCCGGCAGCCCTCCCCCGCCGTCGCCGTCGCCGCCGCCGAAATCTTCAAACCCGACATCGTCTCCGTTCCGGCCAAGGCCCGCAGCAAACGCTCACGCGCCGCCGTTCCCACCAACTGGAACAACTCCCGCCTCCTCCCCCTCTCTCCGACCACCTCCTCCTCCGAACTCGACGTCTTAGCCGTCGCCGCCACGCCGCCGCACCCCGGAAAGAAAGCCACCATTAAGGCCACGGTCACAGCAAAGAAGAAGGATTGTCCGGACGCCGGCGCGTCGCCCGGAGAGGGGCGGAAGTGCATGCACTGCGCCACCGACAAGACGCCTCAGTGGCGGACGGGCCCAATGGGCCCAAAGACGCTGTGCAATGCGTGCGGCGTCCGGTACAAGTCCGGCCGGCTGGTGCCGGAGTACCGGCCCGCTGCCAGCCCCACGTTTGTTCTCACTAAGCATTCAAATTCTCACCGGAAGGTGCTGGAGCTCCGGCGGCAGAAGGAGCTTCAAAGAACACAGCAGCAGCAGCATCAGCATCAGCTGATTCTTGATCATCATCAGAATATGATATTTGATGCATCCAACGGTGACGATTATCTCATCCACCAACATGTGGGCCCCGATTTTCGGCAGCTGATCTAA 1197 56.81 LATSLSPSLSLFFFSSPSPSLLLRSIALRHTSMELPDYFQINNAAYCSSQFVAETRHSSSDNDTDGGCGGEHFIVEELLDFSNDDGVAADVSSFNGNDNNNPSVSVSVIESCNSSNSFSCCEPNSFLDDITHSNLGDAKFSTELCVPYDDLAELEWLSNFVEESFSSEDMQKLELISGVKVKSDETFQIRQPSPAVAVAAAEIFKPDIVSVPAKARSKRSRAAVPTNWNNSRLLPLSPTTSSSELDVLAVAATPPHPGKKATIKATVTAKKKDCPDAGASPGEGRKCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKELQRTQQQQHQHQLILDHHQNMIFDASNGDDYLIHQHVGPDFRQLI 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2267097 2269567 - MC08g0297 Mch8g0323 693944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0323 398 CDD ZnF_GATA 286 333 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g0323 398 ProSiteProfiles GATA-type zinc finger domain profile. 281 317 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g0323 398 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 283 345 - -
Mch8g0323 398 PANTHER GATA TRANSCRIPTION FACTOR 72 353 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Mch8g0323 398 ProSitePatterns GATA-type zinc finger domain. 287 312 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g0323 398 SMART GATA_3 281 331 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g0323 398 FunFam GATA transcription factor 278 364 - -
Mch8g0323 398 Pfam GATA zinc finger 287 321 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g0323 398 Gene3D - 282 331 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g1067 Mch-Chr2:7179548 Mch8g0323 Mch-Chr8:2267097 4.49E-34 dispersed
Mch8g0323 Mch-Chr8:2267097 Mch9g0313 Mch-Chr9:2348359 9.33E-80 dispersed
Mch11g0766 Mch-Chr11:5175344 Mch8g0323 Mch-Chr8:2267097 3.93E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43771 PF00320 GATA 2.10E-15 CL0167 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0323 - - - 0.0