Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0335 ATGAATCAAAGCTCGGAAGAAACAGAGAGCAGCAGCAGCAGCAGCTGGGATCAGGGGACGAAGAAGACCAAACGGGCGCCCAAAAACAGAGACAGCAATGGCAAGCACCCGGTTTACAGAGGGGTCCGAATGCGGAATTGGGGGAAATGGGTGTCCGAAATCCGCGAGCCACGCAAGAAATCGCGCATTTGGCTCGGCACTTTCCCGACCCCTGAAATGGCGGCCCGCGCACACGACGTGGCCGCCCTCAGCATCAAGGGCGCCTCCGCCGCCGCCCTCAACTTCCCGGACCTCGCCCACCTCCTCCCCCGCCCCCTCTCCCTCTCCCCACGCGACGTCCAGGCCGCCGCCACCAAGGCCGCCCACATGACCAATTTCGACTCCTCCTCCTCCGCCGCCGCCACCGCCGCCGCCGCCGAAGACGACGATTCCTCCGCCTCCTTCGACTTCTCCTCCTCCGATGAGCTCGCCGAGATCGTCCAGCTCCCCACTCTCGGAACCACCGCCGCCTACGACTGCAACCAATTCGTCTACCCCGAC 540 64.63 MNQSSEETESSSSSSWDQGTKKTKRAPKNRDSNGKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGASAAALNFPDLAHLLPRPLSLSPRDVQAAATKAAHMTNFDSSSSAAATAAAAEDDDSSASFDFSSSDELAEIVQLPTLGTTAAYDCNQFVYPD 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2362414 2362953 - MC08g0309 Mch8g0335 693956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0335 180 FunFam Ethylene-responsive transcription factor 2 37 97 - -
Mch8g0335 180 CDD AP2 39 98 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0335 180 ProSiteProfiles AP2/ERF domain profile. 38 96 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0335 180 MobiDBLite consensus disorder prediction 1 20 - -
Mch8g0335 180 Gene3D AP2/ERF domain 38 97 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0335 180 Pfam AP2 domain 37 87 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0335 180 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 18 176 IPR051032 -
Mch8g0335 180 SMART rav1_2 38 102 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0335 180 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0335 180 PRINTS Ethylene responsive element binding protein signature 61 77 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0335 180 SUPERFAMILY DNA-binding domain 38 97 IPR016177 GO:0003677(InterPro)
Mch8g0335 180 MobiDBLite consensus disorder prediction 21 38 - -
Mch8g0335 180 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0039 Mch-Chr5:325653 Mch8g0335 Mch-Chr8:2362414 1.68E-37 dispersed
Mch6g0844 Mch-Chr6:5837127 Mch8g0335 Mch-Chr8:2362414 1.78E-46 dispersed
Mch6g2707 Mch-Chr6:28712811 Mch8g0335 Mch-Chr8:2362414 2.21E-26 dispersed
Mch7g0365 Mch-Chr7:5803549 Mch8g0335 Mch-Chr8:2362414 7.41E-26 dispersed
Mch8g0335 Mch-Chr8:2362414 Mch8g1202 Mch-Chr8:8570775 2.55E-53 dispersed
Mch1g1431 Mch-Chr1:16064319 Mch8g0335 Mch-Chr8:2362414 4.23E-17 wgd
Mch11g0770 Mch-Chr11:5196917 Mch8g0335 Mch-Chr8:2362414 3.83E-49 wgd
Mch8g0335 Mch-Chr8:2362414 Mch9g0319 Mch-Chr9:2386528 2.02E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43772 PF00847 AP2 1.80E-14 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0335 K09286 - ath:AT5G11590 180.644