Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch8g0335 | ATGAATCAAAGCTCGGAAGAAACAGAGAGCAGCAGCAGCAGCAGCTGGGATCAGGGGACGAAGAAGACCAAACGGGCGCCCAAAAACAGAGACAGCAATGGCAAGCACCCGGTTTACAGAGGGGTCCGAATGCGGAATTGGGGGAAATGGGTGTCCGAAATCCGCGAGCCACGCAAGAAATCGCGCATTTGGCTCGGCACTTTCCCGACCCCTGAAATGGCGGCCCGCGCACACGACGTGGCCGCCCTCAGCATCAAGGGCGCCTCCGCCGCCGCCCTCAACTTCCCGGACCTCGCCCACCTCCTCCCCCGCCCCCTCTCCCTCTCCCCACGCGACGTCCAGGCCGCCGCCACCAAGGCCGCCCACATGACCAATTTCGACTCCTCCTCCTCCGCCGCCGCCACCGCCGCCGCCGCCGAAGACGACGATTCCTCCGCCTCCTTCGACTTCTCCTCCTCCGATGAGCTCGCCGAGATCGTCCAGCTCCCCACTCTCGGAACCACCGCCGCCTACGACTGCAACCAATTCGTCTACCCCGAC | 540 | 64.63 | MNQSSEETESSSSSSWDQGTKKTKRAPKNRDSNGKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGASAAALNFPDLAHLLPRPLSLSPRDVQAAATKAAHMTNFDSSSSAAATAAAAEDDDSSASFDFSSSDELAEIVQLPTLGTTAAYDCNQFVYPD | 180 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 2362414 | 2362953 | - | MC08g0309 | Mch8g0335 | 693956 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch8g0335 | 180 | FunFam | Ethylene-responsive transcription factor 2 | 37 | 97 | - | - | |
Mch8g0335 | 180 | CDD | AP2 | 39 | 98 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch8g0335 | 180 | ProSiteProfiles | AP2/ERF domain profile. | 38 | 96 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch8g0335 | 180 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Mch8g0335 | 180 | Gene3D | AP2/ERF domain | 38 | 97 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch8g0335 | 180 | Pfam | AP2 domain | 37 | 87 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch8g0335 | 180 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 18 | 176 | IPR051032 | - | |
Mch8g0335 | 180 | SMART | rav1_2 | 38 | 102 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch8g0335 | 180 | PRINTS | Ethylene responsive element binding protein signature | 39 | 50 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch8g0335 | 180 | PRINTS | Ethylene responsive element binding protein signature | 61 | 77 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch8g0335 | 180 | SUPERFAMILY | DNA-binding domain | 38 | 97 | IPR016177 | GO:0003677(InterPro) | |
Mch8g0335 | 180 | MobiDBLite | consensus disorder prediction | 21 | 38 | - | - | |
Mch8g0335 | 180 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch5g0039 | Mch-Chr5:325653 | Mch8g0335 | Mch-Chr8:2362414 | 1.68E-37 | dispersed | |
Mch6g0844 | Mch-Chr6:5837127 | Mch8g0335 | Mch-Chr8:2362414 | 1.78E-46 | dispersed | |
Mch6g2707 | Mch-Chr6:28712811 | Mch8g0335 | Mch-Chr8:2362414 | 2.21E-26 | dispersed | |
Mch7g0365 | Mch-Chr7:5803549 | Mch8g0335 | Mch-Chr8:2362414 | 7.41E-26 | dispersed | |
Mch8g0335 | Mch-Chr8:2362414 | Mch8g1202 | Mch-Chr8:8570775 | 2.55E-53 | dispersed | |
Mch1g1431 | Mch-Chr1:16064319 | Mch8g0335 | Mch-Chr8:2362414 | 4.23E-17 | wgd | |
Mch11g0770 | Mch-Chr11:5196917 | Mch8g0335 | Mch-Chr8:2362414 | 3.83E-49 | wgd | |
Mch8g0335 | Mch-Chr8:2362414 | Mch9g0319 | Mch-Chr9:2386528 | 2.02E-47 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43772 | PF00847 | AP2 | 1.80E-14 | CL0081 | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch8g0335 | K09286 | - | ath:AT5G11590 | 180.644 |