Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0338 ATGGCCAGAATCGCATTGGGAAGCACCGGCGAGGCCACCCAGCCCGACTGCCTCCGAGCCCTCGTCGTCGAATTCATCACCACCTTCCTCTTTGTCTTTGCCGGAGTCGGATCAGCCATGGCCGCCGACAAGCTATTGGCAAACACACTGGTCGGGTTGTTTGCGGTCGCAGTAGCGCACGCACTTGTCGTGGCTGTGATGATCTCCGCAGGCCACATTTCTGGCGGCCATCTCAACCCTGCCGTGACTCTCGGCCTCCTTTTCGGTGGCCACATCACCATCGTTCGATCCATTCTTTACTGGATCGTTCAGCTGCTTGCAGCATCGGCAGCTTCTTTTCTGCTAGCATTCCTCACCGGAGGCTTGACCACTCCAATCCATACATTAGCAAGTGGAGTTGGGTATCTTGAAGGAGTGATATGGGAGATCATTCTCACTTTCTCCTTGCTTTTCACCGTCTATGCAACAATTGTTGATCCAAAGAAGGGAGCTCTTGATGGGCTGGGCCCATTGCTGACTGGGTTTGTGGTGGGGGCTAATATTTTGGCCGGTGGGGCCTTTTCTGGGGCCTCAATGAACCCAGCAAGATCATTTGGGCCTGCTTTGGTTGCCGGAGACTGGACCGACCATTGGGTTTACTGGGTTGGGCCTCTTATTGGTGGTGGGCTTGCTGGTTTCATCTATGAAAATTTCTTCATCGACAGATCTCATGCTCCTCTACCAAGGGCAGAAGATGGCTATTAG 744 53.63 MARIALGSTGEATQPDCLRALVVEFITTFLFVFAGVGSAMAADKLLANTLVGLFAVAVAHALVVAVMISAGHISGGHLNPAVTLGLLFGGHITIVRSILYWIVQLLAASAASFLLAFLTGGLTTPIHTLASGVGYLEGVIWEIILTFSLLFTVYATIVDPKKGALDGLGPLLTGFVVGANILAGGAFSGASMNPARSFGPALVAGDWTDHWVYWVGPLIGGGLAGFIYENFFIDRSHAPLPRAEDGY 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2375034 2377537 - MC08g0312 Mch8g0338 693959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0338 247 SUPERFAMILY Aquaporin-like 13 241 IPR023271 -
Mch8g0338 247 ProSitePatterns MIP family signature. 77 85 IPR022357 -
Mch8g0338 247 FunFam Probable aquaporin TIP1-1 2 244 - -
Mch8g0338 247 Gene3D Glycerol uptake facilitator protein. 2 243 IPR023271 -
Mch8g0338 247 Pfam Major intrinsic protein 12 228 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch8g0338 247 NCBIfam MIP family channel protein 24 228 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch8g0338 247 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch8g0338 247 PRINTS Major intrinsic protein family signature 59 83 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch8g0338 247 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch8g0338 247 PRINTS Major intrinsic protein family signature 141 159 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch8g0338 247 PRINTS Major intrinsic protein family signature 96 115 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch8g0338 247 PRINTS Major intrinsic protein family signature 211 231 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch8g0338 247 PANTHER AQUAPORIN-8 1 238 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g1736 Mch-Chr6:19767608 Mch8g0338 Mch-Chr8:2375034 1.92E-85 dispersed
Mch8g0338 Mch-Chr8:2375034 Mch9g1784 Mch-Chr9:19720111 1.41E-30 dispersed
Mch8g0338 Mch-Chr8:2375034 Mch1g0862 Mch-Chr1:12020213 4.69E-86 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0338 K09873 - csv:101205380 417.927