Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0402 ATGGCTGTCAAAACAGCACAATCATTTAGAGATCGGACACAGGAATTCCAGAACATAACAGAGAGGCTAAAGAAGTCTTTCCCATCTGCCACAGGAACAACTGGAGCAAGTGGTGGTTCGAAATCGGAAGAGCAGCGGTCTGCTGTGGCAATTCAATCTGAATTTAATAAGAGGGCTTCCAAGATTGGGTTAGGGATACACCAGACGTCTCAGAAACTCTCAAAGTTGGCGAAGTTGGCAAAGAGGACTTCAGTTTTTGATGACCCAACAATGGAAATTCAGGAGCTAACTGCACTTATTAAGCAGGACATCACAACATTGAACTCCGCAGTTGTAGATCTTCAGCTTCTCTGCAACTCTAGGAATGAAAGTGGAAACATATCTAGTGATACTACTAGTCACTCAACCACTGTGGTAGATGACCTTAAGAATCGACTGATGAGCACCACAAAAGAATTTAAAGAAGTCCTAACCATGCGAACAGAAAATTTGAAGGTTCATGAGAACAGAAGACAACTATTTTCTTCTACTGCTTCAAAGGAATCTACAAATCCTTTTGTGCGTCAACGCCCATTAGCTTCCAGGTCAGCTGCTGGTGCCCCAAGTGCCGCACCCCCTCCCCCATGGGCCAAGGCATCAACATCTTTTTCCAAAACATCTCCCAGTAAGCAGGTGGATGGGGAGAGTCAACCACTGTTGCAGCAGCAGCAGCAACATCAACAGCAACAGATGGTTCCTTTACAAGATACTTACATGCAGAGCAGAGCTGAAGCTCTTCAAAACGTAGAATCCACCATTCATGAATTGAGCAATATCTTCAACCAGCTGGCAACTCTGGTTTCTGAACAAGGAGAGATTGCTATCAGGATCGACGAGAACATGGATGATACTTTGGCAAATGTGGAGGGGGCACAGGGTGCTCTGCTCAAGTATCTAAACAGTATATCATCTAATAGGTGGTTGATGATCAAAATTTTCTTTGTACTAATATTTTTCCTCATGGTTTTCCTATTTTTTGTGGCTTAA 1026 43.47 MAVKTAQSFRDRTQEFQNITERLKKSFPSATGTTGASGGSKSEEQRSAVAIQSEFNKRASKIGLGIHQTSQKLSKLAKLAKRTSVFDDPTMEIQELTALIKQDITTLNSAVVDLQLLCNSRNESGNISSDTTSHSTTVVDDLKNRLMSTTKEFKEVLTMRTENLKVHENRRQLFSSTASKESTNPFVRQRPLASRSAAGAPSAAPPPPWAKASTSFSKTSPSKQVDGESQPLLQQQQQHQQQQMVPLQDTYMQSRAEALQNVESTIHELSNIFNQLATLVSEQGEIAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2871580 2877019 + MC08g_new0040 Mch8g0402 694023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0402 341 MobiDBLite consensus disorder prediction 170 190 - -
Mch8g0402 341 CDD SNARE_syntaxin5 252 330 - -
Mch8g0402 341 ProSitePatterns Syntaxin / epimorphin family signature. 255 294 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Mch8g0402 341 Gene3D - 49 304 - -
Mch8g0402 341 Pfam SNARE domain 285 337 IPR000727 -
Mch8g0402 341 SUPERFAMILY t-snare proteins 53 304 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Mch8g0402 341 MobiDBLite consensus disorder prediction 1 48 - -
Mch8g0402 341 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 6 25 IPR021538 -
Mch8g0402 341 MobiDBLite consensus disorder prediction 168 245 - -
Mch8g0402 341 MobiDBLite consensus disorder prediction 212 245 - -
Mch8g0402 341 PANTHER SYNTAXIN 54 330 IPR045242 GO:0000139(PANTHER)|GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006888(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Mch8g0402 341 SMART tSNARE_6 244 311 IPR000727 -
Mch8g0402 341 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 249 311 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g0402 Mch-Chr8:2871580 Mch9g1485 Mch-Chr9:17258911 3.73E-89 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0402 K08490 - csv:101203633 509.605