Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0405 ATGGACGTTCCCTCAGTGGAACTAAATTGTGAAAGCGAAGAAGATTCTTACCCTTTATTAATGGCCCGTCCAGAAAACTTCGACAGCAGTGAGCATGTCATTGACATAACTGGTACTGGTGATTCTTCCTCTAGTTTGCCTCATGGTAGGAATTCAAATGGCTTAAATTCATCACAGCCTGAAGACAGACCTTCAAGTAGTACACGAGTTCCCATGTCTCAGCCTTCAATTTCTTCTACTGGATCAAATTCTAGAAATTCCTCATTCATTAGAAGAGGGGATGCGCGACGTCGTAGGAGTCCATTAAATTCTGGTCTATGGATATCTATTGAATTGCTACTCACTATGAGCCAAATTATTGCAGCTATTATTGTCTTATCATTGTCAAGGGATGAAAAACCTCGCGCACCTTTGTTTGCATGGATTGTGGGATATGCATCTGGATGTGGTGCCACTCTTCCTCTTCTCTATTGGCGTTATCGACATCGCAATCAGGCATCAGAACAAGATTCTCTTCAATCCAGTCAGAATTCTTCTCGCATTAATGTTCCTGCTGGGCCATTCTCTCTTTCAGTTTCTAGGACATCAGAAGGGGAAGAACTTCAGCATCCTGCCCAATCCCCTAGAGGCAGTCAAGTGTCGGGCGTTTTTACAGCAAGATTAAAAGTAATGGTTGAATATTTTAAGATGGGCTTGGATTGCTTCTTTGCTGTTTGGTTTGTGGTTGGTAACGTTTGGATCTTTGGAGGGCATTCATCAGCCTCCGAGGCTCCTAACTTGTACAGGCTATGTATAGTGTTTCTTACCTTTAGCTGTATTGGTTATGCCATGCCCTTCATTCTCTGTGTAACCATCTGCTGTTGCCTACCTTGTATAATTTCCATCCTTGGGTTTAGAGAGGACTTGACACAGACCCGAGGAGCCACAACAGAATCTATAAATGCATTGCCAACTTATAAGTTTAAGCTGAAGAAAAGTAGAAGTGGAGATGATAGAGAAAACAACTCCGGGGCTGGGGAAGGAGGAGGGGTTGTGGCTGCTGGAACTGAAAAGGAGCGAGTGATTTCAGGAGAAGATGCTGTCTGTTGCATCTGTCTGGCAAAATACGCTAACAATGATGAACTGAGAGAGTTGCCATGTTCTCACTTTTTCCACAAAGACTGTGTAGATAAATGGTTGAAGATAAACGCCCTGTGCCCGCTTTGCAAAAACGAGGTTGGTGTTTATACTTGTATAATCACACTCCTTGCTCTTGTATTGCCCTCTTCAATTTTGTGGTATAATGGCTATGATAATGAA 1299 42.8 MDVPSVELNCESEEDSYPLLMARPENFDSSEHVIDITGTGDSSSSLPHGRNSNGLNSSQPEDRPSSSTRVPMSQPSISSTGSNSRNSSFIRRGDARRRRSPLNSGLWISIELLLTMSQIIAAIIVLSLSRDEKPRAPLFAWIVGYASGCGATLPLLYWRYRHRNQASEQDSLQSSQNSSRINVPAGPFSLSVSRTSEGEELQHPAQSPRGSQVSGVFTARLKVMVEYFKMGLDCFFAVWFVVGNVWIFGGHSSASEAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCIISILGFREDLTQTRGATTESINALPTYKFKLKKSRSGDDRENNSGAGEGGGVVAAGTEKERVISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINALCPLCKNEVGVYTCIITLLALVLPSSILWYNGYDNE 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2885516 2890866 - MC08g0364 Mch8g0405 694026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0405 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 345 409 IPR013083 -
Mch8g0405 433 ProSiteProfiles Zinc finger RING-type profile. 362 403 IPR001841 -
Mch8g0405 433 SMART ringv_2 361 403 IPR011016 GO:0008270(InterPro)
Mch8g0405 433 MobiDBLite consensus disorder prediction 1 96 - -
Mch8g0405 433 FunFam E3 ubiquitin-protein ligase 345 411 - -
Mch8g0405 433 SUPERFAMILY RING/U-box 354 409 - -
Mch8g0405 433 CDD RING-H2_EL5-like 362 402 - -
Mch8g0405 433 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 407 - -
Mch8g0405 433 SMART ring_2 362 402 IPR001841 -
Mch8g0405 433 Pfam Ring finger domain 362 403 IPR001841 -
Mch8g0405 433 MobiDBLite consensus disorder prediction 32 89 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1300 Mch-Chr11:9189657 Mch8g0405 Mch-Chr8:2885516 5.10E-56 dispersed
Mch11g1301 Mch-Chr11:9197287 Mch8g0405 Mch-Chr8:2885516 4.33E-54 dispersed
Mch5g0362 Mch-Chr5:2480601 Mch8g0405 Mch-Chr8:2885516 3.46E-44 dispersed
Mch8g0405 Mch-Chr8:2885516 Mch9g1657 Mch-Chr9:18647491 1.93E-11 dispersed
Mch8g0405 Mch-Chr8:2885516 Mch1g0489 Mch-Chr1:9276387 5.71E-32 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0405 - - - 0.0