Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0407 ATGATGGAAGAACATAAGTTTTCTGTCAGAATCAGGCGCCCCCATTCTAATTCCTCAGGTAGGCTAGGAGCTATTTCACCCCTATTACAATGTCCAGTCAAAGAACTTTGCAAACGCGCCCACACGGCAATCTCTGAACAAGCACAACTAGATGGAAGTAATGTTCGTGCAACTACTACTTTCGGCCTTCGGCACAAAAGAAGAGCAGTGCTCAAGGATGTTACTAACATGTCCTGTGAGAGCAATAATCTGGATTGCTTACATGCTTCTGAAGTTCAGATGCAAGAGGTTGCACAGACCGAATCAGTTGAAGGTTCAACCATTACAAGGATGGCAGAGTCACAAGGTAAAAAAGAGACAGCACAAGAAAACAAGTTTCACAGTGGCATAGGAAGCTCAAATTTTGCATTCCCCGTGCTTTCAGGATCAAAAGACCATCAAATCAAAGATAAGGCTAGGAATTGTGAGAATTTGTCAGTCTCAAATCACCTTGGTACATTGGATGGTGTTTCAAACTCAGAAGATCCTCAAGCATGCACCCTATATGCCCATGATATATATGATACTATTCGTGTAATAGAGCTTGATCAAAGGCCATCCACTAACTATATGGAAGAGTTACAGAAATATATCACTCCAATCATGCGAGGGATACTAATTGATTGGCTGGTGGAGGTCTCCGAAGAATATAAACTGGTCTCTGACACACTTTACCTCACTGTGAATCTCATTGATCGGTTTCTCTCTCGAAGTTTCATTGAAAGACATAGATTACAGCTTCTTGGTGTTACTTGCATGTTAATCGCCACTAAATATGAAGAAGTCTGTGCACCGTTTGTGGAAGAGTTTTGCTTCATCACTGACAACACCTATACAAGAGGAGAGGTACTAAAAATGGAGGGTGAAGTTCTGAACTTGCTCAACTTTCAGCTTTCTGTTCCCACTACAAAAACATTTCTCAGGAGATTCGTGCAGGTGGCACAGGCTTCTTGCAAGGAACCTTGCGTCGAATTCCAGCATTTAACGGATTATCTAGCAGAGTTGACTCTTCTTGAGTACAGCTTCCTCAGGTTCCTGCCTTCAGCAGTAGCTGCTTCTGTCGTGTTCTTAGCCAGATGGATTCTGAATCAACCAAATCACCCATGGAACCAGACGCTGGAGCATTATACCAATTACAGTGCCTCCGAGCTAAAAACTCCAGTTCTTGCCTTAGAAGATCTACAATTGAACTCCACAAGTTGCCCCTTAAACGCCGTATTCCAGAAGTATAGACAACAGAAGTTTGGGAATGTGGCGACTTTAACCTCCACAAAATCAGTTCTCTCAGTTTTGCAAAACCAGACAGGTTGTGGCGCTTCTGCTTCCAGATGTGGGGTTGAATTTTAA 1386 42.78 MMEEHKFSVRIRRPHSNSSGRLGAISPLLQCPVKELCKRAHTAISEQAQLDGSNVRATTTFGLRHKRRAVLKDVTNMSCESNNLDCLHASEVQMQEVAQTESVEGSTITRMAESQGKKETAQENKFHSGIGSSNFAFPVLSGSKDHQIKDKARNCENLSVSNHLGTLDGVSNSEDPQACTLYAHDIYDTIRVIELDQRPSTNYMEELQKYITPIMRGILIDWLVEVSEEYKLVSDTLYLTVNLIDRFLSRSFIERHRLQLLGVTCMLIATKYEEVCAPFVEEFCFITDNTYTRGEVLKMEGEVLNLLNFQLSVPTTKTFLRRFVQVAQASCKEPCVEFQHLTDYLAELTLLEYSFLRFLPSAVAASVVFLARWILNQPNHPWNQTLEHYTNYSASELKTPVLALEDLQLNSTSCPLNAVFQKYRQQKFGNVATLTSTKSVLSVLQNQTGCGASASRCGVEF 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2899062 2905746 - MC08g0366 Mch8g0407 694028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0407 461 PANTHER CYCLINS 157 425 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Mch8g0407 461 FunFam Mitotic cyclin 6 199 299 - -
Mch8g0407 461 Gene3D - 185 433 - -
Mch8g0407 461 FunFam Cyclin A1 302 433 - -
Mch8g0407 461 Pfam Cyclin, C-terminal domain 314 435 IPR004367 -
Mch8g0407 461 Pfam Cyclin, N-terminal domain 185 312 IPR006671 -
Mch8g0407 461 ProSitePatterns Cyclins signature. 216 247 IPR048258 -
Mch8g0407 461 MobiDBLite consensus disorder prediction 100 115 - -
Mch8g0407 461 SUPERFAMILY Cyclin-like 174 311 IPR036915 -
Mch8g0407 461 PIRSF Cyclin_A_B_D_E 30 448 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Mch8g0407 461 CDD CYCLIN_AtCycA-like_rpt2 314 428 - -
Mch8g0407 461 MobiDBLite consensus disorder prediction 100 123 - -
Mch8g0407 461 SUPERFAMILY Cyclin-like 313 438 IPR036915 -
Mch8g0407 461 Gene3D - 199 312 - -
Mch8g0407 461 SMART Cyclin_C_2 314 437 IPR004367 -
Mch8g0407 461 SMART cyclin_7 221 305 IPR013763 -
Mch8g0407 461 SMART cyclin_7 318 406 IPR013763 -
Mch8g0407 461 CDD CYCLIN_AtCycA_like_rpt1 175 310 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0020 Mch-Chr4:140663 Mch8g0407 Mch-Chr8:2899062 5.24E-43 dispersed
Mch8g0407 Mch-Chr8:2899062 Mch8g0655 Mch-Chr8:4687106 4.06E-86 dispersed
Mch11g0583 Mch-Chr11:3718821 Mch8g0407 Mch-Chr8:2899062 4.99E-145 wgd
Mch8g0407 Mch-Chr8:2899062 Mch9g0378 Mch-Chr9:2821132 5.67E-125 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0407 K06627 - csv:101211578 673.315