Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0424 TCGATCATAGTTCCTCTACCAGCGAATCTATTGGAAGACGCAGCGGACCCGGGATGGATGAGCAAGGGCGACAACGCGTGGCAGATGACGGCGGCGACGCTGGTGGGGCTGCAGAGCGTGCCGGGGCTGATAATCCTGTACGGCGGGGCGGTGAAGAAGAAGTGGGCGATCAACTCGGCGTTCATGGCGCTGTACGCGTTCGCGTGCGTGCTGGTGTGCTGGGTCGGGTGGGGGTACCGGCTGTCGTTTGGGGACAAGCTGGTGCCGTTTTGGGGGAAGCTCAACGTGGCGCTGGACCAGAAGTTTCTGCTGGACCCGGCCTTCAGCGGCAAGTTCCCCTCCGCGACCATGGTGTTCTTCCAGTTCGTGTTCGCCGCGATCACTCTGGTCCTCATCGCGGGGGCTCTCCTGGGCCGGATGAATTTCTATGCCTGGATGCTCTTCGTGCCGCTCTGGCTCACCTTCTCCTATACCTTTGTGGCGTTCAGTATTTGGAGCCCTAATGGGTTCTTCTATAAGATGGGGCTCATTGATTATTCCGGTGGCTATGTCATTCATTTGTCCTCTGGAGTTGCCGGCTTCACTGCCGCTTACTGGGTTGGCCCACGACTCTCGAAAGATCGGGAGAGCTTCCCACCGAACAACATCCTTCTAATGCTGGCGGGAGCCGGGTTACTATGGATGGGGTGGACCGGGTTCAACGGCGGAGACCCTTATGCGGCCAACATCGACGCCTCCCTCGCGGTACTCAACACCCACGTCTGCACCGCGACCAGCCTGCTGACATGGCTGATCTTCGACATCGTGTTCTTCCGTAAACCCTCGGTGATCGGCGCTGTCCAAGGCATGATCACCGGCCTGGTATGCATCACCCCGGCCGCCGGCCTGGTTCAAGGATGGGCCGCCATAATCATGGGAATGCTATCAGGGTCCATCCCGTGGTTCACCATGATGGTGGTCCACAAGAAATCCCCGGTCCTCCAAAAGGTGGACGACACAATGGCCGTGTTCCACACCCACGCCATCGCGGGCAGCCTTGGCGGCATCCTCAGCGGCATCTTCGCCGAGCCGCGCCTGAACTCCATCTACTACGGCGCGTACAACAAATACGTGGGCCTGTTCTACGGATTCAGCACGGCCCAAGTGGGGCTCGGCTTCCGCCAACTCGGCGTCCAACTCCTCGGCATCATATTTGTGACGTTGATCAATGTCATCGTCACCACCATCATCTGTGTGGCTCTCCAGTACATCGTGCCGCTACGGATGACGGAGGAGGACATGGCCATCGGCGACGAGGCCGCACACGGCGAAGAGGCTTACGCCATCTGGGGGCAGGGGGAGAAGCTTGATAACTCTAAGTATGACATTGAGATGCCTGCAAAGCACAGACACGCAGCTGAA 1401 59.17 SIIVPLPANLLEDAADPGWMSKGDNAWQMTAATLVGLQSVPGLIILYGGAVKKKWAINSAFMALYAFACVLVCWVGWGYRLSFGDKLVPFWGKLNVALDQKFLLDPAFSGKFPSATMVFFQFVFAAITLVLIAGALLGRMNFYAWMLFVPLWLTFSYTFVAFSIWSPNGFFYKMGLIDYSGGYVIHLSSGVAGFTAAYWVGPRLSKDRESFPPNNILLMLAGAGLLWMGWTGFNGGDPYAANIDASLAVLNTHVCTATSLLTWLIFDIVFFRKPSVIGAVQGMITGLVCITPAAGLVQGWAAIIMGMLSGSIPWFTMMVVHKKSPVLQKVDDTMAVFHTHAIAGSLGGILSGIFAEPRLNSIYYGAYNKYVGLFYGFSTAQVGLGFRQLGVQLLGIIFVTLINVIVTTIICVALQYIVPLRMTEEDMAIGDEAAHGEEAYAIWGQGEKLDNSKYDIEMPAKHRHAAE 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3030971 3033499 + MC08g0380 Mch8g0424 694045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0424 467 FunFam Ammonium transporter 8 443 - -
Mch8g0424 467 ProSitePatterns Ammonium transporters signature. 178 203 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Mch8g0424 467 Gene3D Ammonium transporter AmtB like domains 10 444 IPR029020 -
Mch8g0424 467 PANTHER AMMONIUM TRANSPORTER MEP2 19 451 IPR001905 GO:0005886(PANTHER)|GO:0008519(PANTHER)|GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(PANTHER)|GO:0072488(InterPro)
Mch8g0424 467 PRINTS Rhesus blood group protein signature 248 270 IPR002229 GO:0005886(InterPro)
Mch8g0424 467 PRINTS Rhesus blood group protein signature 217 235 IPR002229 GO:0005886(InterPro)
Mch8g0424 467 PRINTS Rhesus blood group protein signature 121 137 IPR002229 GO:0005886(InterPro)
Mch8g0424 467 Pfam Ammonium Transporter Family 26 440 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Mch8g0424 467 NCBIfam ammonium transporter 24 440 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Mch8g0424 467 SUPERFAMILY Ammonium transporter 19 422 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1625 Mch-Chr1:17280939 Mch8g0424 Mch-Chr8:3030971 9.19E-194 dispersed
Mch5g1966 Mch-Chr5:19502089 Mch8g0424 Mch-Chr8:3030971 1.55E-191 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0424 K03320 - csv:101210590 859.366