Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch8g0455 | TTCCGCTCTTCCACTCTGCGCTCTACGATCTCTCGGAAGCCAGGTCTTAGCAATTTCTCTCCAGCTAACTTAGTTTTCCTTTGCAGACTTCGTGAAATCGCAACCCTAACTCTTAGTCCAGTTCTTAGCAGGCTAACAGATATGGGAGAAACAAGGGACAACGAGTATGAGGAAGAGCTCCTCGACTACGAGGAAGAGGAAGAGAAGGCCCCCGATTCCGTTGGGGCTAAAGTCAACGGTGAAGCTGGAAAGAAGGGCTATGTTGGAATTCATAGTTCGGGATTCAGAGACTTCCTTTTGAAGCCAGAACTTCTTCGTGCTATAGTGGACTCTGGGTTTGAGCATCCATCTGAAGTGCAACATGAATGTATTCCCCAAGCTATCCTCGGAATGGATGTTATTTGTCAAGCTAAATCTGGTATGGGTAAAACTGCTGTTTTTGTTCTGTCAACTCTGCAGCAGATTGACCCTGTTGCTGGTCAAGTTTCTGCCCTAGTTCTATGCCATACTAGGGAGTTAGCATACCAGATCTGTCATGAGTTTGAAAGGTTCAGCACTTATCTTCCCGATCTGAAGGTTGCTGTCTTCTATGGTGGGGTAAATATTAAAATTCATAAAGATCTACTGAAAAACGAATGCCCACATATCGTTGTTGGAACACCTGGAAGGATATTGGCATTGTCAAGAGATAAGGACCTCTCACTGAAGAATGTTAGGCATTTTATCTTGGATGAATGTGACAAGATGCTTGAGTCACTCGATATGCGGAGGGATGTACAGGAAATCTTCAAGATGACTCCTCATGACAAACAAGTTATGATGTTTTCTGCAACACTCAGCAAAGAAATCCGTCCAGTTTGCAAGAAATTTATGCAAGATCCAATGGAAATTTATGTAGATGACGAGGCAAAGTTGACATTGCATGGTCTTGTCCAGCACTACATCAAATTGAGCGAGATGGAGAAAAATCGGAAGTTGAACGACCTACTCGATGCTTTGGACTTCAACCAAGTTGTTATTTTTGTCAAAAGTGTTAATAGGGCAGCTGAGCTGGATAAGTTGCTGGTGGAGTGTAATTTTCCATCTATATGCATCCACTCTGGAATGTCTCAGGAAGAAAGGTTGACCCGTTACAAGGGTTTCAAGGAAGGACATAAGCGGATTCTTGTGGCTACCGATTTGGTTGGACGAGGAATTGACATCGAACGTGTAAACATTGTCATCAACTATGACATGCCAGATTCTGCTGATACTTATCTGCACAGGGTTGGTAGAGCTGGTAGATTTGGTACTAAAGGGCTTGCTATTACTTTTGTATCATCTGCAGCTGATTCTGATGTTCTCAACAATGTTCAAGAAAGGTTTGAAGTAGATATTAAGGAGCTCCCAGAGCAGATTGATACATCCACATACATGCCATCATAG | 1425 | 42.95 | FRSSTLRSTISRKPGLSNFSPANLVFLCRLREIATLTLSPVLSRLTDMGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILALSRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVNRAAELDKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNNVQERFEVDIKELPEQIDTSTYMPS | 474 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 3237491 | 3242857 | - | MC08g0399 | Mch8g0455 | 694076 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch8g0455 | 474 | SMART | ultradead3 | 112 | 313 | IPR014001 | - | |
Mch8g0455 | 474 | CDD | DEADc_DDX39 | 92 | 299 | - | - | |
Mch8g0455 | 474 | Gene3D | - | 306 | 473 | IPR027417 | - | |
Mch8g0455 | 474 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 124 | 297 | IPR014001 | - | |
Mch8g0455 | 474 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 93 | 121 | IPR014014 | GO:0003724(InterPro) | |
Mch8g0455 | 474 | FunFam | DEAD-box ATP-dependent RNA helicase 56-like | 81 | 299 | - | - | |
Mch8g0455 | 474 | Pfam | Helicase conserved C-terminal domain | 322 | 430 | IPR001650 | - | |
Mch8g0455 | 474 | CDD | SF2_C_DEAD | 310 | 439 | - | - | |
Mch8g0455 | 474 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 92 | 457 | - | GO:0003723(PANTHER)|GO:0003724(PANTHER) | |
Mch8g0455 | 474 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 162 | 441 | IPR027417 | - | |
Mch8g0455 | 474 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 325 | 470 | IPR001650 | - | |
Mch8g0455 | 474 | Pfam | DEAD/DEAH box helicase | 118 | 283 | IPR011545 | GO:0003676(InterPro)|GO:0005524(InterPro) | |
Mch8g0455 | 474 | SMART | helicmild6 | 349 | 430 | IPR001650 | - | |
Mch8g0455 | 474 | Gene3D | - | 89 | 305 | IPR027417 | - | |
Mch8g0455 | 474 | FunFam | DEAD-box ATP-dependent RNA helicase | 306 | 474 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch8g0455 | Mch-Chr8:3237491 | Mch8g0984 | Mch-Chr8:7012121 | 1.14E-73 | dispersed | |
Mch8g0455 | Mch-Chr8:3237491 | Mch9g0240 | Mch-Chr9:1818171 | 1.60E-73 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch8g0455 | K12812 | - | csv:101217346 | 837.41 |