Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0455 TTCCGCTCTTCCACTCTGCGCTCTACGATCTCTCGGAAGCCAGGTCTTAGCAATTTCTCTCCAGCTAACTTAGTTTTCCTTTGCAGACTTCGTGAAATCGCAACCCTAACTCTTAGTCCAGTTCTTAGCAGGCTAACAGATATGGGAGAAACAAGGGACAACGAGTATGAGGAAGAGCTCCTCGACTACGAGGAAGAGGAAGAGAAGGCCCCCGATTCCGTTGGGGCTAAAGTCAACGGTGAAGCTGGAAAGAAGGGCTATGTTGGAATTCATAGTTCGGGATTCAGAGACTTCCTTTTGAAGCCAGAACTTCTTCGTGCTATAGTGGACTCTGGGTTTGAGCATCCATCTGAAGTGCAACATGAATGTATTCCCCAAGCTATCCTCGGAATGGATGTTATTTGTCAAGCTAAATCTGGTATGGGTAAAACTGCTGTTTTTGTTCTGTCAACTCTGCAGCAGATTGACCCTGTTGCTGGTCAAGTTTCTGCCCTAGTTCTATGCCATACTAGGGAGTTAGCATACCAGATCTGTCATGAGTTTGAAAGGTTCAGCACTTATCTTCCCGATCTGAAGGTTGCTGTCTTCTATGGTGGGGTAAATATTAAAATTCATAAAGATCTACTGAAAAACGAATGCCCACATATCGTTGTTGGAACACCTGGAAGGATATTGGCATTGTCAAGAGATAAGGACCTCTCACTGAAGAATGTTAGGCATTTTATCTTGGATGAATGTGACAAGATGCTTGAGTCACTCGATATGCGGAGGGATGTACAGGAAATCTTCAAGATGACTCCTCATGACAAACAAGTTATGATGTTTTCTGCAACACTCAGCAAAGAAATCCGTCCAGTTTGCAAGAAATTTATGCAAGATCCAATGGAAATTTATGTAGATGACGAGGCAAAGTTGACATTGCATGGTCTTGTCCAGCACTACATCAAATTGAGCGAGATGGAGAAAAATCGGAAGTTGAACGACCTACTCGATGCTTTGGACTTCAACCAAGTTGTTATTTTTGTCAAAAGTGTTAATAGGGCAGCTGAGCTGGATAAGTTGCTGGTGGAGTGTAATTTTCCATCTATATGCATCCACTCTGGAATGTCTCAGGAAGAAAGGTTGACCCGTTACAAGGGTTTCAAGGAAGGACATAAGCGGATTCTTGTGGCTACCGATTTGGTTGGACGAGGAATTGACATCGAACGTGTAAACATTGTCATCAACTATGACATGCCAGATTCTGCTGATACTTATCTGCACAGGGTTGGTAGAGCTGGTAGATTTGGTACTAAAGGGCTTGCTATTACTTTTGTATCATCTGCAGCTGATTCTGATGTTCTCAACAATGTTCAAGAAAGGTTTGAAGTAGATATTAAGGAGCTCCCAGAGCAGATTGATACATCCACATACATGCCATCATAG 1425 42.95 FRSSTLRSTISRKPGLSNFSPANLVFLCRLREIATLTLSPVLSRLTDMGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILALSRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVNRAAELDKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNNVQERFEVDIKELPEQIDTSTYMPS 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3237491 3242857 - MC08g0399 Mch8g0455 694076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0455 474 SMART ultradead3 112 313 IPR014001 -
Mch8g0455 474 CDD DEADc_DDX39 92 299 - -
Mch8g0455 474 Gene3D - 306 473 IPR027417 -
Mch8g0455 474 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 124 297 IPR014001 -
Mch8g0455 474 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 93 121 IPR014014 GO:0003724(InterPro)
Mch8g0455 474 FunFam DEAD-box ATP-dependent RNA helicase 56-like 81 299 - -
Mch8g0455 474 Pfam Helicase conserved C-terminal domain 322 430 IPR001650 -
Mch8g0455 474 CDD SF2_C_DEAD 310 439 - -
Mch8g0455 474 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 92 457 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
Mch8g0455 474 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 441 IPR027417 -
Mch8g0455 474 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 325 470 IPR001650 -
Mch8g0455 474 Pfam DEAD/DEAH box helicase 118 283 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Mch8g0455 474 SMART helicmild6 349 430 IPR001650 -
Mch8g0455 474 Gene3D - 89 305 IPR027417 -
Mch8g0455 474 FunFam DEAD-box ATP-dependent RNA helicase 306 474 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g0455 Mch-Chr8:3237491 Mch8g0984 Mch-Chr8:7012121 1.14E-73 dispersed
Mch8g0455 Mch-Chr8:3237491 Mch9g0240 Mch-Chr9:1818171 1.60E-73 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0455 K12812 - csv:101217346 837.41