Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0482 ATGGCTTTCCGCAACCAACTCTCTCGGGACCTTCCTCTCCATTACGGGAACCAGCCTCAGCCGCAGCAGCAACCGGACCGGCCACTATCCGATAATACTCTGCGTTCTATCTTACCTGATCAGCTCACCGACCACTCTCCGCCCGGCGCTGCTTCTAAGACTGAGCATCCGCTTCAGAGTACTCCGAATTGGCTGAATAGCGCGCTACTTCGGAGTCAAACCCCTCATTCTCACTACTCTGGTGAGACCCCGACGACGGCGCCGGATAACGTCAATACCGACTTCCTTAACCTTCACACGACTGCTTCTAATTCCGCCGTCTCCCACCCGTCCGGCCAATGGCTCTCCCGCCCGATCCTCCATCGCAATCACAGTGATGTTATGGATGAGGTAGCGGATGCCGCCGATGCCATGATTGGCGTCACCACCACTTTGTCGCGCGAATCGGATGATTTGAAGAATAATAGCAGCGGCGGCGGAGTGGAGGGCGTAAACAACAGCGAGGATGTGGCGGTTGAGAGCGATGGTAATGAAGGTGCTACTGGTGGAGAGGCTGTGGTAAATTGGCAGAATGCTCGGTCTAAGGCTGAAATTCTGGCGCATCCCCTTTACGAACAGCTGCTCTCTGCCCACGTCGCCTGCCTCCGGATCGCCACGCCGGTGGACCAGTTGCCGAGAATAGATTCTCAGCTTGCTCAGTCTCAGAATGTAGCGGCGAAATACTCGTCGCTGGGCCACGGTTCTCAGCCCATAGTCGGCAATGGAAAAGAGCTTGATCAGTTCATGACGCATTATGTTTTACTGCTTTGTTCTTTTAAAGAACAACTGCAGCAACATGTCCGTGTCCATGCAATGGAAGCAGTATACGCCTGCTGGGAAATTGAGCAATCTTTGCAAAGCTTGACAGGTGTTTCACCAGGTGAAGGTACGGGTGCTACAATGTCTGATGATGACGAAGACCAAATAGATAGTGATGCTAGTTTGTTTGATGGAAGTTTTGAGGGTAATGATGCTATGGGATTTGGTCCTCTTATCCCAACAGAGAGCGAGAGATCCTTGATGGAGAGGGTGAGACACGAATTGAAGCATGAACTAAAGAATGGTTACAAGGAGAAAATTGTAGACATAAGGGAGGAAATTTTACGAAAAAGGAGAGCAGGTAAACTTCCTGGTGACACCACATCCGTCCTAAAGGCTTGGTGGCAATCACATTCAAAATGGCCATATCCTACTGAGGATGATAAAGCAAAGCTAGTTCAGGAAACTGGTCTGCAACTGAAGCAGATAAATAACTGGTTTATCAACCAGAGGAAGCGGAATTGGCACACCAATCCTTCAACATCGACAACCTTGAAGAGCAAACGCAAAAGAAGTAATGCAGGTGAGACAACAGGCAACGAACATCTCCCATAG 1413 50.25 MAFRNQLSRDLPLHYGNQPQPQQQPDRPLSDNTLRSILPDQLTDHSPPGAASKTEHPLQSTPNWLNSALLRSQTPHSHYSGETPTTAPDNVNTDFLNLHTTASNSAVSHPSGQWLSRPILHRNHSDVMDEVADAADAMIGVTTTLSRESDDLKNNSSGGGVEGVNNSEDVAVESDGNEGATGGEAVVNWQNARSKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDSQLAQSQNVAAKYSSLGHGSQPIVGNGKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVYACWEIEQSLQSLTGVSPGEGTGATMSDDDEDQIDSDASLFDGSFEGNDAMGFGPLIPTESERSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEDDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTTLKSKRKRSNAGETTGNEHLP 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3376186 3381415 - MC08g0424 Mch8g0482 694103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0482 470 MobiDBLite consensus disorder prediction 146 166 - -
Mch8g0482 470 Pfam KNOX2 domain 252 302 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Mch8g0482 470 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 190 442 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Mch8g0482 470 MobiDBLite consensus disorder prediction 1 61 - -
Mch8g0482 470 SMART ELK_2 360 381 IPR005539 GO:0003677(InterPro)
Mch8g0482 470 MobiDBLite consensus disorder prediction 438 470 - -
Mch8g0482 470 MobiDBLite consensus disorder prediction 11 40 - -
Mch8g0482 470 FunFam homeobox protein knotted-1-like 3 isoform X1 381 442 - -
Mch8g0482 470 MobiDBLite consensus disorder prediction 146 163 - -
Mch8g0482 470 Pfam ELK domain 360 381 IPR005539 GO:0003677(InterPro)
Mch8g0482 470 SMART KNOX2_2 248 303 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Mch8g0482 470 Gene3D - 381 442 - -
Mch8g0482 470 CDD homeodomain 383 444 IPR001356 GO:0003677(InterPro)
Mch8g0482 470 SUPERFAMILY Homeodomain-like 382 446 IPR009057 -
Mch8g0482 470 SMART KNOX1_2 192 236 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Mch8g0482 470 ProSiteProfiles ELK domain profile. 360 380 IPR005539 GO:0003677(InterPro)
Mch8g0482 470 ProSiteProfiles 'Homeobox' domain profile. 380 443 IPR001356 GO:0003677(InterPro)
Mch8g0482 470 MobiDBLite consensus disorder prediction 438 454 - -
Mch8g0482 470 Pfam Homeobox KN domain 400 439 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Mch8g0482 470 SMART HOX_1 382 447 IPR001356 GO:0003677(InterPro)
Mch8g0482 470 MobiDBLite consensus disorder prediction 74 94 - -
Mch8g0482 470 Pfam KNOX1 domain 195 235 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g2719 Mch-Chr6:28806765 Mch8g0482 Mch-Chr8:3376186 3.98E-125 dispersed
Mch8g0482 Mch-Chr8:3376186 Mch9g2260 Mch-Chr9:22932845 5.52E-30 dispersed
Mch11g0526 Mch-Chr11:3387090 Mch8g0482 Mch-Chr8:3376186 2.72E-235 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43781 PF03791 KNOX2 2.10E-19 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0482 - - - 0.0