Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch8g0482 | ATGGCTTTCCGCAACCAACTCTCTCGGGACCTTCCTCTCCATTACGGGAACCAGCCTCAGCCGCAGCAGCAACCGGACCGGCCACTATCCGATAATACTCTGCGTTCTATCTTACCTGATCAGCTCACCGACCACTCTCCGCCCGGCGCTGCTTCTAAGACTGAGCATCCGCTTCAGAGTACTCCGAATTGGCTGAATAGCGCGCTACTTCGGAGTCAAACCCCTCATTCTCACTACTCTGGTGAGACCCCGACGACGGCGCCGGATAACGTCAATACCGACTTCCTTAACCTTCACACGACTGCTTCTAATTCCGCCGTCTCCCACCCGTCCGGCCAATGGCTCTCCCGCCCGATCCTCCATCGCAATCACAGTGATGTTATGGATGAGGTAGCGGATGCCGCCGATGCCATGATTGGCGTCACCACCACTTTGTCGCGCGAATCGGATGATTTGAAGAATAATAGCAGCGGCGGCGGAGTGGAGGGCGTAAACAACAGCGAGGATGTGGCGGTTGAGAGCGATGGTAATGAAGGTGCTACTGGTGGAGAGGCTGTGGTAAATTGGCAGAATGCTCGGTCTAAGGCTGAAATTCTGGCGCATCCCCTTTACGAACAGCTGCTCTCTGCCCACGTCGCCTGCCTCCGGATCGCCACGCCGGTGGACCAGTTGCCGAGAATAGATTCTCAGCTTGCTCAGTCTCAGAATGTAGCGGCGAAATACTCGTCGCTGGGCCACGGTTCTCAGCCCATAGTCGGCAATGGAAAAGAGCTTGATCAGTTCATGACGCATTATGTTTTACTGCTTTGTTCTTTTAAAGAACAACTGCAGCAACATGTCCGTGTCCATGCAATGGAAGCAGTATACGCCTGCTGGGAAATTGAGCAATCTTTGCAAAGCTTGACAGGTGTTTCACCAGGTGAAGGTACGGGTGCTACAATGTCTGATGATGACGAAGACCAAATAGATAGTGATGCTAGTTTGTTTGATGGAAGTTTTGAGGGTAATGATGCTATGGGATTTGGTCCTCTTATCCCAACAGAGAGCGAGAGATCCTTGATGGAGAGGGTGAGACACGAATTGAAGCATGAACTAAAGAATGGTTACAAGGAGAAAATTGTAGACATAAGGGAGGAAATTTTACGAAAAAGGAGAGCAGGTAAACTTCCTGGTGACACCACATCCGTCCTAAAGGCTTGGTGGCAATCACATTCAAAATGGCCATATCCTACTGAGGATGATAAAGCAAAGCTAGTTCAGGAAACTGGTCTGCAACTGAAGCAGATAAATAACTGGTTTATCAACCAGAGGAAGCGGAATTGGCACACCAATCCTTCAACATCGACAACCTTGAAGAGCAAACGCAAAAGAAGTAATGCAGGTGAGACAACAGGCAACGAACATCTCCCATAG | 1413 | 50.25 | MAFRNQLSRDLPLHYGNQPQPQQQPDRPLSDNTLRSILPDQLTDHSPPGAASKTEHPLQSTPNWLNSALLRSQTPHSHYSGETPTTAPDNVNTDFLNLHTTASNSAVSHPSGQWLSRPILHRNHSDVMDEVADAADAMIGVTTTLSRESDDLKNNSSGGGVEGVNNSEDVAVESDGNEGATGGEAVVNWQNARSKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDSQLAQSQNVAAKYSSLGHGSQPIVGNGKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVYACWEIEQSLQSLTGVSPGEGTGATMSDDDEDQIDSDASLFDGSFEGNDAMGFGPLIPTESERSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEDDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTTLKSKRKRSNAGETTGNEHLP | 470 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 3376186 | 3381415 | - | MC08g0424 | Mch8g0482 | 694103 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch8g0482 | 470 | MobiDBLite | consensus disorder prediction | 146 | 166 | - | - | |
Mch8g0482 | 470 | Pfam | KNOX2 domain | 252 | 302 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Mch8g0482 | 470 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 190 | 442 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Mch8g0482 | 470 | MobiDBLite | consensus disorder prediction | 1 | 61 | - | - | |
Mch8g0482 | 470 | SMART | ELK_2 | 360 | 381 | IPR005539 | GO:0003677(InterPro) | |
Mch8g0482 | 470 | MobiDBLite | consensus disorder prediction | 438 | 470 | - | - | |
Mch8g0482 | 470 | MobiDBLite | consensus disorder prediction | 11 | 40 | - | - | |
Mch8g0482 | 470 | FunFam | homeobox protein knotted-1-like 3 isoform X1 | 381 | 442 | - | - | |
Mch8g0482 | 470 | MobiDBLite | consensus disorder prediction | 146 | 163 | - | - | |
Mch8g0482 | 470 | Pfam | ELK domain | 360 | 381 | IPR005539 | GO:0003677(InterPro) | |
Mch8g0482 | 470 | SMART | KNOX2_2 | 248 | 303 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Mch8g0482 | 470 | Gene3D | - | 381 | 442 | - | - | |
Mch8g0482 | 470 | CDD | homeodomain | 383 | 444 | IPR001356 | GO:0003677(InterPro) | |
Mch8g0482 | 470 | SUPERFAMILY | Homeodomain-like | 382 | 446 | IPR009057 | - | |
Mch8g0482 | 470 | SMART | KNOX1_2 | 192 | 236 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Mch8g0482 | 470 | ProSiteProfiles | ELK domain profile. | 360 | 380 | IPR005539 | GO:0003677(InterPro) | |
Mch8g0482 | 470 | ProSiteProfiles | 'Homeobox' domain profile. | 380 | 443 | IPR001356 | GO:0003677(InterPro) | |
Mch8g0482 | 470 | MobiDBLite | consensus disorder prediction | 438 | 454 | - | - | |
Mch8g0482 | 470 | Pfam | Homeobox KN domain | 400 | 439 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Mch8g0482 | 470 | SMART | HOX_1 | 382 | 447 | IPR001356 | GO:0003677(InterPro) | |
Mch8g0482 | 470 | MobiDBLite | consensus disorder prediction | 74 | 94 | - | - | |
Mch8g0482 | 470 | Pfam | KNOX1 domain | 195 | 235 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch6g2719 | Mch-Chr6:28806765 | Mch8g0482 | Mch-Chr8:3376186 | 3.98E-125 | dispersed | |
Mch8g0482 | Mch-Chr8:3376186 | Mch9g2260 | Mch-Chr9:22932845 | 5.52E-30 | dispersed | |
Mch11g0526 | Mch-Chr11:3387090 | Mch8g0482 | Mch-Chr8:3376186 | 2.72E-235 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43781 | PF03791 | KNOX2 | 2.10E-19 | No_clan | Mch | TF |
Pathway information
