Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0487 ATGACCAAAATTGCTTGCCAGAACAAGGTTTTGAAAATGGCTCCCATTTTGTCACCATTCCTCTCTACAAAAACCTTCAACTCCTCCCCCCAACCTCACTTCCTTTACAAACTTCCCAAAAACCCCTCTCAAAGAAAAGAAAAATTCCCCATTGCCATGCCCAGACCACAACAAAGATTCCGCGGTGTCCGACAGCGCCACTGGGGCTCCTGGGTCTCGGAAATCCGCCACCCTTTATTGAAGACTAGAATTTGGCTAGGCACATTCGAGACGGCGGAGGATGCGGCGCGGGCCTACGACGAAGCTGCACGGCTGATGTGCGGTCCAAGGGCAAGGACTAACTTCCCTTACGACGCGTCTCTCTCTCGTTCCTCCTCTTCTAGACTCCTCTCTGCCACCTTGACCGCCAAGCTCCACCGCTGCTACATGGCATCGCTGCAGCTAACCAAGCAATCCTCCGCCGTCCATCGACCTCTGATCAACCCAATCCAAACCGATGCTACTGTGGCCTCTAGCATTGCCCCGGCCAACCGAGTGGCACCCGAAGCGACCCCGATGAAAGTCAAACTGGAGAGCGGCGATTGCGGGCAGCCGTTGATGATTGAGATTCTGGATGATGACCACATAGAACAAATGATCGAGGAGCTGCTTGATTACGGGGAAATTGAGCTCCGCACGGCCATCTGA 687 53.86 MTKIACQNKVLKMAPILSPFLSTKTFNSSPQPHFLYKLPKNPSQRKEKFPIAMPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSAVHRPLINPIQTDATVASSIAPANRVAPEATPMKVKLESGDCGQPLMIEILDDDHIEQMIEELLDYGEIELRTAI 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3421508 3422982 + MC08g0429 Mch8g0487 694108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0487 228 FunFam Ethylene-responsive transcription factor 2 58 117 - -
Mch8g0487 228 ProSiteProfiles AP2/ERF domain profile. 59 116 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0487 228 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0487 228 PRINTS Ethylene responsive element binding protein signature 82 98 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0487 228 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 52 157 IPR050913 -
Mch8g0487 228 CDD AP2 58 118 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0487 228 Gene3D AP2/ERF domain 58 118 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0487 228 SMART rav1_2 59 122 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0487 228 Pfam AP2 domain 59 108 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0487 228 SUPERFAMILY DNA-binding domain 59 118 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0721 Mch-Chr6:4958144 Mch8g0487 Mch-Chr8:3421508 2.72E-29 dispersed
Mch8g0487 Mch-Chr8:3421508 Mch9g0455 Mch-Chr9:3388481 3.45E-56 dispersed
Mch8g0487 Mch-Chr8:3421508 Mch8g0488 Mch-Chr8:3428700 2.24E-57 tandem
Mch11g0520 Mch-Chr11:3342964 Mch8g0487 Mch-Chr8:3421508 2.70E-64 wgd
Mch8g0487 Mch-Chr8:3421508 Mch8g1082 Mch-Chr8:7650517 1.51E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43782 PF00847 AP2 3.00E-11 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0487 - - - 0.0