Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch8g0487 | ATGACCAAAATTGCTTGCCAGAACAAGGTTTTGAAAATGGCTCCCATTTTGTCACCATTCCTCTCTACAAAAACCTTCAACTCCTCCCCCCAACCTCACTTCCTTTACAAACTTCCCAAAAACCCCTCTCAAAGAAAAGAAAAATTCCCCATTGCCATGCCCAGACCACAACAAAGATTCCGCGGTGTCCGACAGCGCCACTGGGGCTCCTGGGTCTCGGAAATCCGCCACCCTTTATTGAAGACTAGAATTTGGCTAGGCACATTCGAGACGGCGGAGGATGCGGCGCGGGCCTACGACGAAGCTGCACGGCTGATGTGCGGTCCAAGGGCAAGGACTAACTTCCCTTACGACGCGTCTCTCTCTCGTTCCTCCTCTTCTAGACTCCTCTCTGCCACCTTGACCGCCAAGCTCCACCGCTGCTACATGGCATCGCTGCAGCTAACCAAGCAATCCTCCGCCGTCCATCGACCTCTGATCAACCCAATCCAAACCGATGCTACTGTGGCCTCTAGCATTGCCCCGGCCAACCGAGTGGCACCCGAAGCGACCCCGATGAAAGTCAAACTGGAGAGCGGCGATTGCGGGCAGCCGTTGATGATTGAGATTCTGGATGATGACCACATAGAACAAATGATCGAGGAGCTGCTTGATTACGGGGAAATTGAGCTCCGCACGGCCATCTGA | 687 | 53.86 | MTKIACQNKVLKMAPILSPFLSTKTFNSSPQPHFLYKLPKNPSQRKEKFPIAMPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSAVHRPLINPIQTDATVASSIAPANRVAPEATPMKVKLESGDCGQPLMIEILDDDHIEQMIEELLDYGEIELRTAI | 228 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 3421508 | 3422982 | + | MC08g0429 | Mch8g0487 | 694108 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch8g0487 | 228 | FunFam | Ethylene-responsive transcription factor 2 | 58 | 117 | - | - | |
Mch8g0487 | 228 | ProSiteProfiles | AP2/ERF domain profile. | 59 | 116 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch8g0487 | 228 | PRINTS | Ethylene responsive element binding protein signature | 60 | 71 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch8g0487 | 228 | PRINTS | Ethylene responsive element binding protein signature | 82 | 98 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch8g0487 | 228 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 52 | 157 | IPR050913 | - | |
Mch8g0487 | 228 | CDD | AP2 | 58 | 118 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch8g0487 | 228 | Gene3D | AP2/ERF domain | 58 | 118 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch8g0487 | 228 | SMART | rav1_2 | 59 | 122 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch8g0487 | 228 | Pfam | AP2 domain | 59 | 108 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch8g0487 | 228 | SUPERFAMILY | DNA-binding domain | 59 | 118 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch6g0721 | Mch-Chr6:4958144 | Mch8g0487 | Mch-Chr8:3421508 | 2.72E-29 | dispersed | |
Mch8g0487 | Mch-Chr8:3421508 | Mch9g0455 | Mch-Chr9:3388481 | 3.45E-56 | dispersed | |
Mch8g0487 | Mch-Chr8:3421508 | Mch8g0488 | Mch-Chr8:3428700 | 2.24E-57 | tandem | |
Mch11g0520 | Mch-Chr11:3342964 | Mch8g0487 | Mch-Chr8:3421508 | 2.70E-64 | wgd | |
Mch8g0487 | Mch-Chr8:3421508 | Mch8g1082 | Mch-Chr8:7650517 | 1.51E-43 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43782 | PF00847 | AP2 | 3.00E-11 | CL0081 | Mch | TF |
Pathway information
