Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch8g0488 | ATGGCCAGACCACAACAGCGATATCGAGGAGTTCGTCAAAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCATTACTGAAAACCAGAATTTGGCTGGGCACTTTCGAGACAGCGGAAGACGCCGCGAGAGCCTACGACGAAGCCGCCCGTCTAATGTGCGGCCCCAGAGCCAGAACCAACTTCCCCTTCAACACAAACAACTCCACTTCCTCCTCTTCCTCCAAACTCCTCTCCCCCAATTTGACCGCCAAGCTCCACCGCTGCTACATGGCGTCTCTCCATTTGACGCACCCGCCGCCGCAGAAACCGGCCGCCCACCGCGAGGAGAAAAGAAGGGCAGCGACGGCAGGCGGCGAGAAGGAGGGGGCGGCGGCGGAGAGCTGGCAGCAGCCGTTCGAGGCGCTGGAAGAGGCTCACATCGAACAGATGATTGAGGAATTGGTTCATTACGGGTCCGTTGAGCTGTGCTCTGTGGTCCCATCTCAGGCGTTTTGA | 501 | 59.08 | MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPFNTNNSTSSSSSKLLSPNLTAKLHRCYMASLHLTHPPPQKPAAHREEKRRAATAGGEKEGAAAESWQQPFEALEEAHIEQMIEELVHYGSVELCSVVPSQAF | 166 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 3428700 | 3429914 | + | MC08g0430 | Mch8g0488 | 694109 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch8g0488 | 166 | ProSiteProfiles | AP2/ERF domain profile. | 7 | 64 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch8g0488 | 166 | Pfam | AP2 domain | 7 | 56 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch8g0488 | 166 | CDD | AP2 | 6 | 64 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch8g0488 | 166 | MobiDBLite | consensus disorder prediction | 98 | 130 | - | - | |
Mch8g0488 | 166 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 4 | 118 | IPR050913 | - | |
Mch8g0488 | 166 | PRINTS | Ethylene responsive element binding protein signature | 8 | 19 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch8g0488 | 166 | PRINTS | Ethylene responsive element binding protein signature | 30 | 46 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch8g0488 | 166 | FunFam | Ethylene-responsive transcription factor 2 | 6 | 66 | - | - | |
Mch8g0488 | 166 | SMART | rav1_2 | 7 | 70 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch8g0488 | 166 | Gene3D | AP2/ERF domain | 6 | 66 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch8g0488 | 166 | SUPERFAMILY | DNA-binding domain | 7 | 66 | IPR016177 | GO:0003677(InterPro) | |
Mch8g0488 | 166 | MobiDBLite | consensus disorder prediction | 103 | 119 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch11g0520 | Mch-Chr11:3342964 | Mch8g0488 | Mch-Chr8:3428700 | 9.37E-61 | dispersed | |
Mch11g0559 | Mch-Chr11:3591294 | Mch8g0488 | Mch-Chr8:3428700 | 6.46E-30 | dispersed | |
Mch8g0200 | Mch-Chr8:1320538 | Mch8g0488 | Mch-Chr8:3428700 | 1.78E-21 | dispersed | |
Mch8g0488 | Mch-Chr8:3428700 | Mch9g0455 | Mch-Chr9:3388481 | 7.95E-54 | dispersed | |
Mch8g0487 | Mch-Chr8:3421508 | Mch8g0488 | Mch-Chr8:3428700 | 2.24E-57 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43783 | PF00847 | AP2 | 6.30E-12 | CL0081 | Mch | TF |
Pathway information
