Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0488 ATGGCCAGACCACAACAGCGATATCGAGGAGTTCGTCAAAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCATTACTGAAAACCAGAATTTGGCTGGGCACTTTCGAGACAGCGGAAGACGCCGCGAGAGCCTACGACGAAGCCGCCCGTCTAATGTGCGGCCCCAGAGCCAGAACCAACTTCCCCTTCAACACAAACAACTCCACTTCCTCCTCTTCCTCCAAACTCCTCTCCCCCAATTTGACCGCCAAGCTCCACCGCTGCTACATGGCGTCTCTCCATTTGACGCACCCGCCGCCGCAGAAACCGGCCGCCCACCGCGAGGAGAAAAGAAGGGCAGCGACGGCAGGCGGCGAGAAGGAGGGGGCGGCGGCGGAGAGCTGGCAGCAGCCGTTCGAGGCGCTGGAAGAGGCTCACATCGAACAGATGATTGAGGAATTGGTTCATTACGGGTCCGTTGAGCTGTGCTCTGTGGTCCCATCTCAGGCGTTTTGA 501 59.08 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPFNTNNSTSSSSSKLLSPNLTAKLHRCYMASLHLTHPPPQKPAAHREEKRRAATAGGEKEGAAAESWQQPFEALEEAHIEQMIEELVHYGSVELCSVVPSQAF 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3428700 3429914 + MC08g0430 Mch8g0488 694109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0488 166 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0488 166 Pfam AP2 domain 7 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0488 166 CDD AP2 6 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0488 166 MobiDBLite consensus disorder prediction 98 130 - -
Mch8g0488 166 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 118 IPR050913 -
Mch8g0488 166 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0488 166 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0488 166 FunFam Ethylene-responsive transcription factor 2 6 66 - -
Mch8g0488 166 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0488 166 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0488 166 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677(InterPro)
Mch8g0488 166 MobiDBLite consensus disorder prediction 103 119 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0520 Mch-Chr11:3342964 Mch8g0488 Mch-Chr8:3428700 9.37E-61 dispersed
Mch11g0559 Mch-Chr11:3591294 Mch8g0488 Mch-Chr8:3428700 6.46E-30 dispersed
Mch8g0200 Mch-Chr8:1320538 Mch8g0488 Mch-Chr8:3428700 1.78E-21 dispersed
Mch8g0488 Mch-Chr8:3428700 Mch9g0455 Mch-Chr9:3388481 7.95E-54 dispersed
Mch8g0487 Mch-Chr8:3421508 Mch8g0488 Mch-Chr8:3428700 2.24E-57 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43783 PF00847 AP2 6.30E-12 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0488 - - - 0.0