Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0500 ATGTCGGACGAAGAACACCACTTCGAATCCAAGGCCGACGCCGGCGCTTCCAAGACTTTCCCTCAGCAAGCTGGAACCATCCGTAAGAATGGTTACATTGTCATTAAGGGCCGTCCCTGTAAGGTAGTTGAGGTTTCTACATCCAAGACTGGAAAGCATGGGCATGCTTGCCATTTTGTGGCAATTGATATATTCAATTCCAAAAAACTTGAAGATATTGTACCGTCGTCCCACAACTGTGATGTTCCCGAGGTTACTCGAACTGATTATCAGCTTATCGACATCTCCGAAGATGGATTTGTGAGTCTTTTAACTGACAACGGAAACACAAAGGATGATTTGAGGCTTCCAACTGATGAAAGTTTACTTGACCAGATTAGAGATGGATTTGCTGAAGGAAAGGACCCTGTTGTGAGTGTCATGTCAGCCATGGGAGAGGAACAAATCTGTGGCTTGAAGGATATTGGCCCAAAGAAT 477 44.86 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHACHFVAIDIFNSKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDESLLDQIRDGFAEGKDPVVSVMSAMGEEQICGLKDIGPKN 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3544230 3546213 + MC08g0440 Mch8g0500 694121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0500 159 MobiDBLite consensus disorder prediction 1 21 - -
Mch8g0500 159 Pfam Translation initiation factor 5A-like, N-terminal 17 78 IPR048670 -
Mch8g0500 159 CDD S1_eIF5A 85 155 - -
Mch8g0500 159 Gene3D - 1 84 IPR014722 -
Mch8g0500 159 Gene3D - 85 158 IPR012340 -
Mch8g0500 159 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 153 IPR020189 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Mch8g0500 159 SMART eIF_5a_2 84 153 IPR020189 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Mch8g0500 159 NCBIfam translation initiation factor IF-5A 18 151 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)
Mch8g0500 159 SUPERFAMILY Nucleic acid-binding proteins 85 155 IPR012340 -
Mch8g0500 159 PIRSF Transl_init_eIF5A 1 156 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)
Mch8g0500 159 FunFam Eukaryotic translation initiation factor 5A 1 84 - -
Mch8g0500 159 SUPERFAMILY Translation proteins SH3-like domain 15 92 IPR008991 -
Mch8g0500 159 FunFam Eukaryotic translation initiation factor 5A 85 157 - -
Mch8g0500 159 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 156 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0003746(PANTHER)|GO:0006414(PANTHER)|GO:0043022(InterPro)|GO:0045901(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g0500 Mch-Chr8:3544230 Mch9g2093 Mch-Chr9:21923517 1.97E-102 dispersed
Mch11g0503 Mch-Chr11:3184914 Mch8g0500 Mch-Chr8:3544230 1.45E-102 wgd
Mch6g0624 Mch-Chr6:4221727 Mch8g0500 Mch-Chr8:3544230 5.06E-103 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0500 K03263 - csv:101211156 306.99