Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0546 ATGGACGGGGGTGCTCAGTACAATCCACGTACCGTGGAAGAGGTCTTTAGGGATTTCAAGGGCCGTAGAGCTGGTTTGATTAAGGCTCTCACTACTGATGTCGAAGAGTTCTACCAGCAATGTGATCCGGAGAAAGAAAATCTCTGCCTTTACGGATTTCCTAGTGAGCAGTGGGAAGTCAATTTACCTGCGGAAGAGGTGCCTCCGGAGCTTCCAGAACCTGCACTGGGTATTAATTTTGCCAGAGACGGGATGCAAGAAAAGGATTGGCTATCCTTGGTTGCAGTGCATAGTGATGTTTGGCTGCTTTCTGTGGCATTTTATTTTGGAGCTAGGTTTGGATTTGATAAGACAGATAGGAAGCGTCTATTTAATATGATAAATGATCTTCCAACAATATTTGAAGTGGTGACAGGGACAGCCAAAAAACAAGTTAAGGATAAATCATCAGTTTCAAATCATAGCAGTAATAAATCTAAATCAAATCCAAAGCGGAGTTCTGAACCTCAAGTAAAAAATGCGAAGGCAGTCCAATCTAAGGATGAGGACGAGGAAGGTTTGGAAGAGGAAGACGAGGAAGAACATGGAGAAACACTTTGCGGAGCTTGTGGAGAGAACTATGCATCAGATGAGTTCTGGATTTGCTGCGACATATGCGAGAAATGGTTCCATGGGAAGTGCGTCAAGATCACCCCGGCTAGGGCAGAGCATATTAAGCAGTATAAATGTCCATCTTGCAGCAACAAGAGAATGCGACCCTGA 762 44.36 MDGGAQYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQVKNAKAVQSKDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRMRP 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3936328 3941736 + MC08g0481 Mch8g0546 694167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0546 253 Pfam PHD-finger 200 246 IPR019787 -
Mch8g0546 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Mch8g0546 253 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Mch8g0546 253 SUPERFAMILY FYVE/PHD zinc finger 189 250 IPR011011 -
Mch8g0546 253 SMART PHD_3 199 247 IPR001965 -
Mch8g0546 253 CDD PHD_AL_plant 199 249 IPR044104 -
Mch8g0546 253 MobiDBLite consensus disorder prediction 145 174 - -
Mch8g0546 253 PANTHER CPG BINDING PROTEIN 7 252 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Mch8g0546 253 FunFam PHD finger alfin-like protein 192 248 - -
Mch8g0546 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 248 IPR013083 -
Mch8g0546 253 MobiDBLite consensus disorder prediction 145 193 - -
Mch8g0546 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g1941 Mch-Chr5:19342027 Mch8g0546 Mch-Chr8:3936328 2.03E-112 dispersed
Mch6g0951 Mch-Chr6:6738202 Mch8g0546 Mch-Chr8:3936328 1.55E-58 dispersed
Mch8g0546 Mch-Chr8:3936328 Mch8g3233 Mch-Chr8:34353573 5.09E-146 dispersed
Mch10g0597 Mch-Chr10:4024756 Mch8g0546 Mch-Chr8:3936328 1.08E-123 transposed
Mch8g0546 Mch-Chr8:3936328 Mch9g0232 Mch-Chr9:1738377 5.58E-140 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43790 PF12165 Alfin 2.10E-69 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0546 K26274 - csv:101208889 457.988