Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0557 ATGGAGGAAATGTCCCCAGCGGTTGTGGTGCCATTTAGGGTGGGTAATTCAGTCTGTGATAACACCAACATGGCGACTCCCATGGATATCACAAGACTTAAGCTAATGGCTGATACTGCTGGTTTGTTATCTGAATCTGTGACTAAGGCTTCTACCGACCCGACTGAAGTAGGTTCTTCGGATGATTGTAAGAGTTCTAATGGGGAGGAAGATGTCGGTATTACTACAATTTCAGTTGCTAATGATGACAAGTGTGAAGGAGTTCAGTTGTCGGTCGTGTTAACTCAAAATAATAGAAATTGGGTCGCAGCAGATGAGACGGTATCCCATGGAAGTGAGGAAGATGATTCTTTATCTTTAGAGGGTGATCACATTTACGATAGTTCTTGTTCGTATTCGATTGCTAGTGAGAATAGCAGCATTTGTGGAGATGATTTTTTAGGTTCTGAGGTGTCTTCTTTTGAAACGTTCAGTTCCATCAGCAATGCGAAGGACATTAGCAGTGTTGAGATTGCAGCTGAAGCCAATCTTGGAGAGTCTAATGTTGAAAGTCTTGAGACTCAGATTGTGGGTTCTTCTGCTGTAGCAGTTAGCCTCGAAGAAGATGTTGGAGATGGATTGAGCATTGAAGCATGTAACATGGTTCTCCAGCTGCCTCTTGAGAAGAGGGCGAGTGAACCAGTCGGTCGAAGCGTTTTTGAGGTAGATTGTGTCCCCCTTTGGGGATTTACATCAGTCTGTGGAAGAAGACCCGAAATGGAAGATGCAGTGGCAACTGTACCAAGATTTTCAGAAATTCCTATCCAAATGCTTGTTGGCAACCGAGTTCTTGATGGCTCAAGCAAGCCTATAGCTCACCAAACTGTTCATTTTTTTGGAGTATATGATGGCCATGGTGGCTCTCAGGTTGCAAATTTTTGTCGTGAACGTATGCATTTGGCTCTATCCGAGGAGATAGAACTTGCTAAGAAAGATGTAGCTGCTGGTAATATAAAGGATAATTGCCAAGAGCTATGGAGAAAAGCATTCACTAAATGCTTTCTAAAAGTTGATGCTGAAATTGGAGGGAGACCTGGTGCTGAGCCTGTTGCCCCAGAAACTGTAGGCTCCACTGCTGTTGTTGCAATTCTCTGTGCTTCCCACATCATTGTTGCAAACTGTGGAGATTCTAGAGCAGTTCTTTGTCGTGGAAAGGAGCCTGTGGCATTGTCTGTGGATCATAAACCCAATAGAGAAGATGAATATGAAAGGATTGAGGCTGCTGGAGGAAAGGTCATACAGTGGAATGGGCACCGCGTTTTTGGTGTTCTTGCAATGTCAAGATCTATTGGTGATAGATATTTGAAACCGTGGATCATTCCGGATCCAGAAGTGATGTTCCTGCCTCGGGCGAAAGATGACGAATGCCTCATTCTAGCTAGTGATGGTTTGTGGGATGTAATGACGAATGAAGAGGTATGCGACCTGGCTCGGAGACGAATCCTACTCTGGCACAAGAAGAACGGTGTCACTCCGCCATCCGAAAGGGGGGCGGGAATCGATCCTGCAGCACAAGCAGCCGCTGAATACCTCTCGAACCGAGCTCTCCAGAAGGGCAGCAAAGACAACATCACAGTCATTGTGATCGATTTGAAAGCTCAAAGGAAGTTCAAGACGAAAACATGA 1665 45.05 MEEMSPAVVVPFRVGNSVCDNTNMATPMDITRLKLMADTAGLLSESVTKASTDPTEVGSSDDCKSSNGEEDVGITTISVANDDKCEGVQLSVVLTQNNRNWVAADETVSHGSEEDDSLSLEGDHIYDSSCSYSIASENSSICGDDFLGSEVSSFETFSSISNAKDISSVEIAAEANLGESNVESLETQIVGSSAVAVSLEEDVGDGLSIEACNMVLQLPLEKRASEPVGRSVFEVDCVPLWGFTSVCGRRPEMEDAVATVPRFSEIPIQMLVGNRVLDGSSKPIAHQTVHFFGVYDGHGGSQVANFCRERMHLALSEEIELAKKDVAAGNIKDNCQELWRKAFTKCFLKVDAEIGGRPGAEPVAPETVGSTAVVAILCASHIIVANCGDSRAVLCRGKEPVALSVDHKPNREDEYERIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVMFLPRAKDDECLILASDGLWDVMTNEEVCDLARRRILLWHKKNGVTPPSERGAGIDPAAQAAAEYLSNRALQKGSKDNITVIVIDLKAQRKFKTKT 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3997575 4002095 - MC08g0491 Mch8g0557 694178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0557 554 CDD PP2Cc 242 544 IPR001932 -
Mch8g0557 554 MobiDBLite consensus disorder prediction 46 69 - -
Mch8g0557 554 Pfam Protein phosphatase 2C 261 537 IPR001932 -
Mch8g0557 554 PANTHER PROTEIN PHOSPHATASE 188 543 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0009788(PANTHER)|GO:0035970(PANTHER)
Mch8g0557 554 SMART PP2C_4 230 542 IPR001932 -
Mch8g0557 554 MobiDBLite consensus disorder prediction 46 62 - -
Mch8g0557 554 SUPERFAMILY PP2C-like 237 545 IPR036457 -
Mch8g0557 554 FunFam Protein phosphatase 2C 16 228 554 - -
Mch8g0557 554 Gene3D - 227 554 IPR036457 -
Mch8g0557 554 ProSitePatterns PPM-type phosphatase domain signature. 291 299 IPR000222 GO:0043169(InterPro)
Mch8g0557 554 ProSiteProfiles PPM-type phosphatase domain profile. 240 544 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g2553 Mch-Chr4:26060666 Mch8g0557 Mch-Chr8:3997575 1.04E-64 dispersed
Mch6g1983 Mch-Chr6:22242782 Mch8g0557 Mch-Chr8:3997575 9.71E-21 dispersed
Mch8g0557 Mch-Chr8:3997575 Mch8g0987 Mch-Chr8:7033612 1.76E-171 dispersed
Mch8g0557 Mch-Chr8:3997575 Mch6g0853 Mch-Chr6:5919257 3.91E-87 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0557 K14497 - csv:101207918 971.844