Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch8g0560 | GTCATATTTGTGAATACCAGGCGCAAGGTAGATTGGCTTACAGATAAGATGCGCAGCCGTGACCACACTGTTTCTGCCACACATGGAGACATGGACCAAAACTCTAGAGATATCATAATGCGAGAGTTTCGGTCTGGTTCATCTCGTGTCCTCATTACTACTGATCTCTTAGCCAGAGGAATTGATGTCCAACAAGTTTCTCTTGTGATAAATTACGATCTCCCTACTCAGCCAGAGAACTACCTCCATCGAATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCCATCAATTTC | 300 | 45.0 | VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINF | 100 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 4021250 | 4021549 | + | MC08g0494 | Mch8g0560 | 694181 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch8g0560 | 100 | CDD | SF2_C_DEAD | 1 | 100 | - | - | |
Mch8g0560 | 100 | SMART | helicmild6 | 11 | 92 | IPR001650 | - | |
Mch8g0560 | 100 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1 | 100 | IPR027417 | - | |
Mch8g0560 | 100 | Pfam | Helicase conserved C-terminal domain | 1 | 92 | IPR001650 | - | |
Mch8g0560 | 100 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1 | 100 | IPR001650 | - | |
Mch8g0560 | 100 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 1 | 100 | - | GO:0003723(PANTHER)|GO:0003724(PANTHER) | |
Mch8g0560 | 100 | Gene3D | - | 1 | 100 | IPR027417 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch8g0560 | Mch-Chr8:4021250 | Mch8g0984 | Mch-Chr8:7012121 | 1.87E-64 | dispersed | |
Mch8g0560 | Mch-Chr8:4021250 | Mch9g0240 | Mch-Chr9:1818171 | 4.70E-65 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch8g0560 | K03257 | - | csv:101221456 | 201.06 |