Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0560 GTCATATTTGTGAATACCAGGCGCAAGGTAGATTGGCTTACAGATAAGATGCGCAGCCGTGACCACACTGTTTCTGCCACACATGGAGACATGGACCAAAACTCTAGAGATATCATAATGCGAGAGTTTCGGTCTGGTTCATCTCGTGTCCTCATTACTACTGATCTCTTAGCCAGAGGAATTGATGTCCAACAAGTTTCTCTTGTGATAAATTACGATCTCCCTACTCAGCCAGAGAACTACCTCCATCGAATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCCATCAATTTC 300 45.0 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINF 100
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4021250 4021549 + MC08g0494 Mch8g0560 694181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0560 100 CDD SF2_C_DEAD 1 100 - -
Mch8g0560 100 SMART helicmild6 11 92 IPR001650 -
Mch8g0560 100 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 100 IPR027417 -
Mch8g0560 100 Pfam Helicase conserved C-terminal domain 1 92 IPR001650 -
Mch8g0560 100 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 100 IPR001650 -
Mch8g0560 100 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 100 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
Mch8g0560 100 Gene3D - 1 100 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g0560 Mch-Chr8:4021250 Mch8g0984 Mch-Chr8:7012121 1.87E-64 dispersed
Mch8g0560 Mch-Chr8:4021250 Mch9g0240 Mch-Chr9:1818171 4.70E-65 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0560 K03257 - csv:101221456 201.06