Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0594 TCCGACGAAGATTCGCCGGTGGCGGTGGCGGACGCGTTCTCGTGTGACCATTTTCGGATGTTCGACTTCAAAGTCCGCACGTGCGCGCGTGGGAGGTCGCACGATTGGACCAAATGTCCGTACGCGCATCCCGGCGAGAAGGCGCGCCGCCGAGATCCGAGGAAGTTCCGCTACTCCGGCGCCGAGTGCCCGGACTTACGGCAGGGGTTCTGCAAAAAGGGGGACACGTGCGAGTTCGCCCACGGCGTGTTCGAGAGTTGGCTCCACCCGGACCGGTACCGGACTCAGGCGTGCCGCGACGGCATGGCCTGCCGCCGGCGCGTCTGCTTCTTCGCCCACTCGTCGGAGCAACTCCGCATTCCGTCGAAACAGAGCATCCGCTCTCCTCTGGCCAGGGGAAAGGGAATCGCCGCTATATCATCGCCGACTTCCATCCTGATTTCACCGACGGAGTCGCCGCCGATGTCTCCGACGACCGGCGGCGAGTCGTTGAGGAGATTAGCGGCACTGATGCAGAATCTCCAGGTGGACGATCTGAAATTGAGTCCTCCGGCGGCGGGCTTGGGTTGTCCCCGGGTTTCATGTCTCCGATGGGAGAGAAGTTACGAGGAAGAGCCGGCAATGGAGAGAGTGGAATCAGGGAGAAATCTGCGAACCCTAATGTACGCAAAATTGATGAGAGAAAATTCGGTGGAG 696 61.21 SDEDSPVAVADAFSCDHFRMFDFKVRTCARGRSHDWTKCPYAHPGEKARRRDPRKFRYSGAECPDLRQGFCKKGDTCEFAHGVFESWLHPDRYRTQACRDGMACRRRVCFFAHSSEQLRIPSKQSIRSPLARGKGIAAISSPTSILISPTESPPMSPTTGGESLRRLAALMQNLQVDDLKLSPPAAGLGCPRVSCLRWERSYEEEPAMERVESGRNLRTLMYAKLMRENSVE 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4229834 4230529 - MC08g0525 Mch8g0594 694215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0594 232 PANTHER UNKEMPT FAMILY MEMBER 11 173 IPR045234 -
Mch8g0594 232 SMART c3hfinal6 92 115 IPR000571 GO:0046872(InterPro)
Mch8g0594 232 SMART c3hfinal6 57 83 IPR000571 GO:0046872(InterPro)
Mch8g0594 232 Gene3D - 52 126 - -
Mch8g0594 232 FunFam Zinc finger CCCH domain-containing protein 66 15 83 - -
Mch8g0594 232 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 61 82 IPR000571 GO:0046872(InterPro)
Mch8g0594 232 SUPERFAMILY CCCH zinc finger 57 85 IPR036855 GO:0046872(InterPro)
Mch8g0594 232 ProSiteProfiles Zinc finger C3H1-type profile. 57 84 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0886 Mch-Chr6:6190545 Mch8g0594 Mch-Chr8:4229834 9.81E-77 dispersed
Mch8g0594 Mch-Chr8:4229834 Mch8g3199 Mch-Chr8:34150729 3.18E-72 dispersed
Mch11g0396 Mch-Chr11:2510719 Mch8g0594 Mch-Chr8:4229834 1.33E-90 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43797 PF00642 zf-CCCH 6.30E-06 CL0537 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0594 - - - 0.0