Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0605 ATGGCTCCTTGGTGGGGAAAAGAAAGCCACAAAGGAACCCCTGTGGTCGTCAAGATGGAGAATCCCAACTGGTCAATGGTCGAACTTGAAGGTCCCTCCGACGACGACTTCATCATTCCCGGCGAGTCACCGCCGGGGCGAGCCCGGGACAAAGGGCGCGGCAAAAATGCCAAGCAGCTTACTTGGGTCCTCCTCCTCAAGGCCCACAAGGCCGCCGGCTGCTTAACCTCCATTGGGTCTGCAATGGTCAACATCGGCGCCGCCGTCAGGCGCCGTCTCGCTTCCGGCAGGACCGACGCCGAAGCCGACATTGACAATGCCGACGGCGGTGTGAGGGAGAACCCAACAGTCAAAACCAGGTTTTATCTGTTTATAAAGATTTTCCTTTGGGTGTCGGTGGTTCTGTTAGGGTTTGAGGTGGCGGCTTATTACAAGGGCTGGCATTTTGGGGCACCCCATCTTAAATTGAACTACTTGTGGACAGCCTCATTCGGGGTTAAGGATGTTTTCGACTGGTTTTATTCGAAATGGGTTTTGATTCGGGTTGAATATTTGGCTCCTCCTCTGCAATTTTTGGCCAATGTTTGTATAGTATTGTTCCTTATTCAGACTCTGGATAGGCTGATTCTTTGTCTGGGCTGTTTCTGGATCCGATTCAAGAAAATCAAACCAGTCCCTAATGTTGCTGCCTTGGATCTTGAATCTGGAGAGAATGGCTACTTCCCCATGGTTCTTGTTCAAATCCCAATGTGCAATGAGAAAGAGGTTTATCAGCAATCGATTGCTGCTGTCTGCAACTTGGACTGGCCAAAAGATAAGCTACTGATTCAGGTTCTTGATGACTCGGATGACCCGATCACCCAATTGTTGATCAAGGAAGAGGTTGAAAAATGGCAGCAACTCGACGCCCACATTGAGTACCGGCACCGGTTGATCCGAGAGGGGTATAAGGCGGGCAATCTCAAATCTGCCATGAATTGCAGCTATGTCAAAGACTATGAATTTGTTGCAATCTTTGATGCTGATTTTCAACCTGCCCCTGATTTCCTTAAAAGAACTGTTCCTCATTTTAAGGATAATGAGGAACTAGGACTAGTTCAAGCACGGTGGTCCTTCGTTAACAAGGACGAGAACTTGTTAACCAGGCTGCAGAACGTTAACTTAGCCTTCCATTTCGAGGTCGAGCAGCAGGTGAATAGCGTGTTTCTGAATTTCTTTGGATTCAATGGAACGGCTGGTGTTTGGAGGATAAAGGCTCTTGAAGAAGCCGGTGGATGGTTGGAGAGGACCACTGTTGAGGATATGGACATTGCAGTTCGTGCTCATCTTCATGGATGGAAATTCATATTCCTCAACGATGTAGAGTGCCACTGTGAGTTACCAGAATCGTATGAAGCGTATAGAAAACAACAGCACAGATGGCACTCTGGACCAATGCAACTGTTTCGTCTTTGCTTGCCCGACATAGTTCGATCAAAGATTAGCATATCCAAGAAATTCAACTTGATTTTCCTGTTCTTTCTCCTTCGGAAGCTGATACTACCGTTTTATTCATTTACCCTTTTCTGCATAATTCTCCCAATGACGATGTTCATTCCCGAAGCCGAGCTACCTGCGTGGGTTGTATGTTACATTCCAGCCACCATGTCTTTTCTCAACATCCTTCCAGCACCAAAATCCTTCCCCTTCATTGTCCCTTACCTCCTCTTTGAGAACACAATGTCAGTAACTAAGTTCAATGCGATGGTCTCGGGTCTCTTCCAGCTGGGTAGTGCATACGAATGGGTTGTTACGAAGAAGTCAGGCCGCTCCTCGGAGGGCGATCTCGTCTCAATGGTCGGGAAGAAGGATCTGAACAATGAAAAGAGCTTCTCCACAAACAATCTGGAGGAGATTGAGTTGATCCAAAAACAGGAAAACAAGTTGCCAAAGAAGAAACATAACAGAATATACATGAAGGAGCTAGCACTGGCTTTCCTTCTTCTAACAGCCTCAGCTAGAAGCCTCTTATCAGCTCAAGGGATTCATTTCTACTTCTTGATGTTTCAGGGCATCTCCTTCCTCCTCGTCGGTCTAGACTTGATCGGCGAGCAGGTTGCTTGA 2103 47.31 MAPWWGKESHKGTPVVVKMENPNWSMVELEGPSDDDFIIPGESPPGRARDKGRGKNAKQLTWVLLLKAHKAAGCLTSIGSAMVNIGAAVRRRLASGRTDAEADIDNADGGVRENPTVKTRFYLFIKIFLWVSVVLLGFEVAAYYKGWHFGAPHLKLNYLWTASFGVKDVFDWFYSKWVLIRVEYLAPPLQFLANVCIVLFLIQTLDRLILCLGCFWIRFKKIKPVPNVAALDLESGENGYFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKDKLLIQVLDDSDDPITQLLIKEEVEKWQQLDAHIEYRHRLIREGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPAPDFLKRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQNVNLAFHFEVEQQVNSVFLNFFGFNGTAGVWRIKALEEAGGWLERTTVEDMDIAVRAHLHGWKFIFLNDVECHCELPESYEAYRKQQHRWHSGPMQLFRLCLPDIVRSKISISKKFNLIFLFFLLRKLILPFYSFTLFCIILPMTMFIPEAELPAWVVCYIPATMSFLNILPAPKSFPFIVPYLLFENTMSVTKFNAMVSGLFQLGSAYEWVVTKKSGRSSEGDLVSMVGKKDLNNEKSFSTNNLEEIELIQKQENKLPKKKHNRIYMKELALAFLLLTASARSLLSAQGIHFYFLMFQGISFLLVGLDLIGEQVA 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4329710 4333963 + MC08g0535 Mch8g0605 694226

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0605 700 Coils Coil 615 635 - -
Mch8g0605 700 Pfam Glycosyl transferase family group 2 336 542 IPR001173 -
Mch8g0605 700 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 171 699 - GO:0005794(PANTHER)|GO:0016757(PANTHER)
Mch8g0605 700 MobiDBLite consensus disorder prediction 35 54 - -
Mch8g0605 700 SUPERFAMILY Nucleotide-diphospho-sugar transferases 244 538 IPR029044 -
Mch8g0605 700 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 235 461 IPR029044 -
Mch8g0605 700 FunFam probable xyloglucan glycosyltransferase 5 235 460 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0605 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g1996 Mch-Chr4:22330173 Mch8g0605 Mch-Chr8:4329710 2.49E-137 dispersed
Mch4g2242 Mch-Chr4:23956344 Mch8g0605 Mch-Chr8:4329710 4.14E-302 dispersed
Mch5g1664 Mch-Chr5:17458230 Mch8g0605 Mch-Chr8:4329710 7.09E-135 dispersed
Mch9g1064 Mch-Chr9:9871576 Mch8g0605 Mch-Chr8:4329710 3.53E-304 transposed
Mch11g0387 Mch-Chr11:2422199 Mch8g0605 Mch-Chr8:4329710 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch2g1153 . 220 380 REM Transcription Factor Family AT1G49480 72.7 3.3e-58 221.9
Mch11g0635 . 1 696 REM Transcription Factor Family AT2G24630 76.6 0.0e+00 1079.7
Mch4g2242 . 2 673 REM Transcription Factor Family AT2G24630 69.0 9.1e-269 922.9
Mch11g0387 . 1 710 REM Transcription Factor Family AT2G24630 64.3 4.4e-263 904.0
Mch8g0605 . 5 701 REM Transcription Factor Family AT2G24630 65.0 5.5e-258 887.1
Mch9g1064 . 5 695 REM Transcription Factor Family AT2G24630 62.4 1.8e-245 845.5
Mch11g0635 . 1 696 REM Transcription Factor Family AT2G24630 76.6 0.0e+00 1079.7
Mch4g2242 . 2 673 REM Transcription Factor Family AT2G24630 69.0 9.1e-269 922.9
Mch11g0387 . 1 710 REM Transcription Factor Family AT2G24630 64.3 4.4e-263 904.0
Mch8g0605 . 5 701 REM Transcription Factor Family AT2G24630 65.0 5.5e-258 887.1
Mch9g1064 . 5 695 REM Transcription Factor Family AT2G24630 62.4 1.8e-245 845.5
Mch11g0635 . 1 696 REM Transcription Factor Family AT2G24630 76.6 0.0e+00 1079.7
Mch4g2242 . 2 673 REM Transcription Factor Family AT2G24630 69.0 9.1e-269 922.9
Mch11g0387 . 1 710 REM Transcription Factor Family AT2G24630 64.3 4.4e-263 904.0
Mch8g0605 . 5 701 REM Transcription Factor Family AT2G24630 65.0 5.5e-258 887.1
Mch9g1064 . 5 695 REM Transcription Factor Family AT2G24630 62.4 1.8e-245 845.5
Mch2g1153 . 220 380 REM Transcription Factor Family AT1G49480 72.7 3.3e-58 221.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002112 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 3 2 4 2 2 2 2 2 2 2 2 2 3 2 1 65