Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0606 ATGGTGGTGGGGTTGAAAGGAAAAGTAAAAGACGTGGTGGGTGTGTTTCTCAAATACACAGATCCCTATGGATTGCAGGGATACTACCCAACATTTGCTTATTTTGCTTCCTCCAATTCATTCTCTTTGTTTAGTTTAAAGAGACCAACCCCTTTGCCTCTTCTCCTCTACAACTTCCCTTCCATTCAACCACAACACTTGGCACAAGGAGGTGAGGGAAGAAAAATGAAGTCGAGGAACGAGAATAACAGTAACAACAACAACAACAATAGTTGGTTGGGATTCTCTCTGTCGCCCCACATGAAAATGGAGCTCACCACTCCCTCTGATCCTCACACTCACTCCTACAATAACTCCTCCTCTGCTGCTGCTCCTCCTCATCCTCACACTCCCACAAGCTTCTACTTGTCCCCTCATTTCAACAACTCCTCTGAATTTTTCTACCCCCAGAATCCCAATCCCCCTTCTCTCTCCGTCATGCCCCTCAAATCCGACGGCTCTCTCTGCATCATGGAGGCCCTCTCCAGATCCCAAACCCAAGGTATGGCGCCGAAGCTGGAGGACTTTCTCGGGGGGCGTGGCTATTTCAATCAGAATGCGGAATCGGAGCCCGAGAGGGAGCATTCATTGAATAGACACCAGAATCAAGACCACCACATTTTAATCCACAATTCCCATCATTACTATCCTGGATTGGTTCCTAATTCCGTTGCTGCAATTGGAAGCTGCCATCCCCAAATCCCCCAGATTCCCTCCGAGGACGACGAAATCCCCTGCCTTACCAACTGGGTCTCTCGTCCTCACTTCAATAATCATCATCATCCTCTGGTGGACCACCACATCGCCGCCGGCGTCAATGACGGCGCCGGAATGACCTGCGGGGATCTCCAGTCGCTTAGCTTGTCGATGAGCCCCGGTTCTCAATCCACCTCTTTCCCGGCTTCCGGCCAGATCTCCCCCACCGGAGTAGACGCCTCCGCCGCCGCCTCCGCCGTTGAAACTAAGAAAAGAGGCCCCGGAAAGCTCTGCCAGAAGCAGCCCGTTCACCGCAAATCCATTGACACGTTCGGCCAGAGAACCTCCCAATATCGTGGCGTCACCAGGCATAGGTGGACTGGGAGATATGAAGCTCATTTATGGGATAATAGCTGCAAGAAAGAAGGCCAAACCAGGAAAGGAAGACAAGGTGGATATGATATGGAAGAAAAAGCTGCAAGAGCTTACGACCTTGCTGCCCTCAAGTACTGGGGACCCTCCACCCATATAAATTTTCCACTGGAGAATTACCAGACTGAACTTGAAGAAATGAAGAACATGAGCCGCCAGGAATACGTTGCTCACTTGAGAAGAAAAAGCAGTGGCTTTTCGAGGGGCGCTTCAGTTTTCCGTGGAGTTACAAGACATCACCAACATGGAAGATGGCAGGCGAGGATTGGGAGAGTTGCCGGAAACAAAGACCTCTATCTTGGGACATTTAGCACGCAAGAGGAAGCGGCTGAGGCATATGACATAGCAGCAATCAAATTCCGCGGTGTAAATGCAGTCACCAACTTTGACATTTCCAGATACGATGTCGACAGAATCATGGCCAGTAATACCCTTCTGGCCGGAGATCTTGCTAGAAGGAACAAGCAAATCGAGCCCGGTAATGAGGCTGCCGCAGCCCCCGCGCCCCTCGGTTTCGACTCGTCGACCACGCAGAACAACAATGCCGGGATCAATCCTGACGAGGCCAGCAATGGCGCCAATGGGAATGGTAGTACTGATTGGAAGATGGCATTGTATCAAAACCAGCAGCAGCAGCAGGCTGCTACTTGTGTTGCTGAATCACTTGACCATCACAAGTCCTCCATGACAGCTGCATCGGGGAGCTATCGAAACGCGTCGTTTTCGATGGCGTTGCAGGACTTGATTGGGATCGAATCGATGAACTCGAATAATAATAATAGTCATGGCATTGATGATGATGTAGGCTGCAAACAAGTGACTCATTTTTCGAATTCGTCGCCTCTGGTGACAAGTTTGAGTAGCTCAAGAGAAGGTAGCCCCGACAAGACGAATGTATCAATGCCGTTTGCAAAGCCCCCACCCCTGATGGCGTCCAAGCTTATTGGGGCAGCCACGAGCGGAGTCGGCTCGTGGTACCCGTCCCCGCCGCAGCTGAGGCCAACGGCCATTTCCATGGCTCATTTGCCTGTTTTTGCAGCTTGGAACGACACT 2220 50.99 MVVGLKGKVKDVVGVFLKYTDPYGLQGYYPTFAYFASSNSFSLFSLKRPTPLPLLLYNFPSIQPQHLAQGGEGRKMKSRNENNSNNNNNNSWLGFSLSPHMKMELTTPSDPHTHSYNNSSSAAAPPHPHTPTSFYLSPHFNNSSEFFYPQNPNPPSLSVMPLKSDGSLCIMEALSRSQTQGMAPKLEDFLGGRGYFNQNAESEPEREHSLNRHQNQDHHILIHNSHHYYPGLVPNSVAAIGSCHPQIPQIPSEDDEIPCLTNWVSRPHFNNHHHPLVDHHIAAGVNDGAGMTCGDLQSLSLSMSPGSQSTSFPASGQISPTGVDASAAASAVETKKRGPGKLCQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQTELEEMKNMSRQEYVAHLRRKSSGFSRGASVFRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDISRYDVDRIMASNTLLAGDLARRNKQIEPGNEAAAAPAPLGFDSSTTQNNNAGINPDEASNGANGNGSTDWKMALYQNQQQQQAATCVAESLDHHKSSMTAASGSYRNASFSMALQDLIGIESMNSNNNNSHGIDDDVGCKQVTHFSNSSPLVTSLSSSREGSPDKTNVSMPFAKPPPLMASKLIGAATSGVGSWYPSPPQLRPTAISMAHLPVFAAWNDT 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4348038 4351544 - MC08g0536 Mch8g0606 694227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0606 740 MobiDBLite consensus disorder prediction 108 127 - -
Mch8g0606 740 CDD AP2 460 521 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0606 740 Pfam AP2 domain 362 417 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0606 740 Pfam AP2 domain 460 511 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0606 740 MobiDBLite consensus disorder prediction 307 349 - -
Mch8g0606 740 MobiDBLite consensus disorder prediction 67 135 - -
Mch8g0606 740 PRINTS Ethylene responsive element binding protein signature 363 374 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0606 740 PRINTS Ethylene responsive element binding protein signature 501 521 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0606 740 MobiDBLite consensus disorder prediction 560 589 - -
Mch8g0606 740 SUPERFAMILY DNA-binding domain 460 521 IPR016177 GO:0003677(InterPro)
Mch8g0606 740 SMART rav1_2 461 525 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0606 740 SMART rav1_2 362 431 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0606 740 FunFam AP2-like ethylene-responsive transcription factor 460 521 - -
Mch8g0606 740 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 203 602 - -
Mch8g0606 740 ProSiteProfiles AP2/ERF domain profile. 461 519 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0606 740 Gene3D AP2/ERF domain 461 521 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0606 740 Gene3D AP2/ERF domain 361 427 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0606 740 ProSiteProfiles AP2/ERF domain profile. 362 425 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0606 740 FunFam AP2-like ethylene-responsive transcription factor ANT 361 427 - -
Mch8g0606 740 MobiDBLite consensus disorder prediction 80 96 - -
Mch8g0606 740 MobiDBLite consensus disorder prediction 307 324 - -
Mch8g0606 740 SUPERFAMILY DNA-binding domain 361 427 IPR016177 GO:0003677(InterPro)
Mch8g0606 740 CDD AP2 361 425 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0606 740 MobiDBLite consensus disorder prediction 550 589 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g0606 Mch-Chr8:4348038 Mch8g1031 Mch-Chr8:7280075 1.99E-118 dispersed
Mch6g0591 Mch-Chr6:4024548 Mch8g0606 Mch-Chr8:4348038 1.07E-77 transposed
Mch9g0483 Mch-Chr9:3560491 Mch8g0606 Mch-Chr8:4348038 1.15E-78 transposed
Mch9g1891 Mch-Chr9:20537313 Mch8g0606 Mch-Chr8:4348038 8.19E-77 transposed
Mch1g1314 Mch-Chr1:15217897 Mch8g0606 Mch-Chr8:4348038 3.55E-167 wgd
Mch11g0385 Mch-Chr11:2405751 Mch8g0606 Mch-Chr8:4348038 1.09E-176 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43799 PF00847 AP2 5.30E-10 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0606 K09285 - csv:101212797 883.634