Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0620 AAAGGGTATCCCAAAATGCCGATGTACCAACCCGTCGTGGGCTGCGGCGCCAAGATTCTAGATCTGGAAACTGTCGTCAAAGACGGGATTCTGGGCGGCGGAGTCGGAGGCGGCGGCGGCGGAGTAGGGGAGAAATTGGATCTGAAGGAGATGATTGAGGAGCTGGAATCCTTCATAGAGGTCCCATCGGTGTTCATCTGCCCAATCTCGCTCGAGCCGATGCAAGATCCGGTGACCCTCTGCTCCGGCCAGACCTACGAGCGCTCCAACATTCTCAAATGGTTCTCTCTCGGCCACTTAACTTGCCCCACCACAATGCAAGAACTCTGGGACGATTCCGTCACTCCGAACCGGACCCTCCACCAGCTGATCCACACCTGGTTTTCCCAAAAGTACTTGGCCTTGAAAAAGCGGTCCGAGGACGTTCAAGGCAGAGTTCTAGAGCTCTTGGATTCGTTGAAGAGAGTCAAGGGCCAAGCTAGGGTTCAGTCCCTTAAAGATCTCCGACATGTCGTCACCGCCCACTCCTCCGCCAAGAAGATGGTTGTCGACAACGGCGGCGTCGGCTTAATCTCCTCTCTTTTGGGCTCTTTCACTTCCCACGCCGTCGGGTCCGAAGCCGTGGGGATCCTCGTCAATTTGGATCTCGATTCGGAGCTGAAGAAGAATCTGATTCAACCCACCAGAATATCGCTAATCGCGGATATTTTAAACGAAGGCTCCATAGAAACCAAAATTAATTGCACGAAATTCATCAAAATGTTGATGGACGGCGAGGATTTGAGATCGGAAAACGTCTCCAGTTTAAGCCTCTTGGTCGGATTGTTGAGAATGGTGAAGGATCAGAGACACCCAACCGGAGTATCCGCCGGACTCAGTTTACTCCGATCGCTCTGTTCCAACGAACCAATCAGAAAGCAACTCGTCAGCATCGGCGCCGTCGCGAAACTCGGCGGCGCCCTCTCCGGTCTAAACCCCGATTGCCTGGAATCAGCGCTCTATATTCTCGAGGTGTTATCGTCGCTTCCAGAAGGAAGAATCGCGTTGAAAGACTGCGAGGATACGATTAGGAATTTGGTGAAATTGTTGATGAAAGTGTCGGAGATTTGTACTCAATTTGCGCTGTCGATCTTGTGGGCGGTTTTCAAGTTGGCTCCGGAGGAATGCGCGGTGCTGGCGGTGGAGGCCGGTTTGGCGGCGAAGCTGCTGCTTATGATCCAAAGTGAGTGCAATAATTCAGAGCTGAAACAGAGATCCATAGAGCTATTGAAATTGTGTAGTCTAAATTACCCGGATTCTACCTTCATTTCCAAGTGTAAGCTTACCAGAACTATACAA 1338 51.57 KGYPKMPMYQPVVGCGAKILDLETVVKDGILGGGVGGGGGGVGEKLDLKEMIEELESFIEVPSVFICPISLEPMQDPVTLCSGQTYERSNILKWFSLGHLTCPTTMQELWDDSVTPNRTLHQLIHTWFSQKYLALKKRSEDVQGRVLELLDSLKRVKGQARVQSLKDLRHVVTAHSSAKKMVVDNGGVGLISSLLGSFTSHAVGSEAVGILVNLDLDSELKKNLIQPTRISLIADILNEGSIETKINCTKFIKMLMDGEDLRSENVSSLSLLVGLLRMVKDQRHPTGVSAGLSLLRSLCSNEPIRKQLVSIGAVAKLGGALSGLNPDCLESALYILEVLSSLPEGRIALKDCEDTIRNLVKLLMKVSEICTQFALSILWAVFKLAPEECAVLAVEAGLAAKLLLMIQSECNNSELKQRSIELLKLCSLNYPDSTFISKCKLTRTIQ 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4451264 4452601 - MC08g0549 Mch8g0620 694241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0620 446 PANTHER WDSAM1 PROTEIN 59 439 IPR045185 GO:0061630(InterPro)
Mch8g0620 446 SUPERFAMILY RING/U-box 57 131 - -
Mch8g0620 446 SUPERFAMILY ARM repeat 136 432 IPR016024 -
Mch8g0620 446 CDD RING-Ubox_PUB 62 114 IPR045210 -
Mch8g0620 446 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 133 IPR013083 -
Mch8g0620 446 Pfam U-box domain 61 131 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch8g0620 446 SMART Ubox_2 64 127 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch8g0620 446 ProSiteProfiles U-box domain profile. 60 134 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch8g0620 446 Gene3D - 134 444 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g0620 Mch-Chr8:4451264 Mch8g2291 Mch-Chr8:26030881 3.13E-23 dispersed
Mch11g0376 Mch-Chr11:2352256 Mch8g0620 Mch-Chr8:4451264 2.42E-203 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0620 - - - 0.0